CircRNA Information

General Information
circRNA Basic Information
CircID chr8:140637144|140637283
Strand -
CircType exon
Host Gene ENSG00000280303.2;
Algorism CIRI2;
Sequence TGCACTTTTACTTTATATGCTTTTCTGTACCTTTACTGTAGTATTTCACGGAAATTTTTAAATAATCATGAATGTTACCACTTTCCTATTTATGAACCATGCAACCTCATCAATCTTCCCAGTTCGCAGATGCCCACCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:140637144|140637283 hsa-miR-17-5p 0 0 1
chr8:140637144|140637283 hsa-miR-17-3p 0 0 1
chr8:140637144|140637283 hsa-miR-20a-5p 0 0 1
chr8:140637144|140637283 hsa-miR-20a-3p 0 0 1
chr8:140637144|140637283 hsa-miR-93-5p 0 0 1
chr8:140637144|140637283 hsa-miR-93-3p 0 0 1
chr8:140637144|140637283 hsa-miR-106a-5p 0 0 1
chr8:140637144|140637283 hsa-miR-106a-3p 0 0 1
chr8:140637144|140637283 hsa-miR-181c-5p 0 0 1
chr8:140637144|140637283 hsa-miR-181c-3p 0 0 1
chr8:140637144|140637283 hsa-miR-144-5p 0 0 1
chr8:140637144|140637283 hsa-miR-144-3p 0 0 1
chr8:140637144|140637283 hsa-miR-106b-5p 0 0 1
chr8:140637144|140637283 hsa-miR-106b-3p 0 0 1
chr8:140637144|140637283 hsa-miR-340-5p 0 0 1
chr8:140637144|140637283 hsa-miR-340-3p 0 0 1
chr8:140637144|140637283 hsa-miR-20b-5p 0 0 1
chr8:140637144|140637283 hsa-miR-20b-3p 0 0 1
chr8:140637144|140637283 hsa-miR-433-5p 0 0 1
chr8:140637144|140637283 hsa-miR-433-3p 0 0 1
chr8:140637144|140637283 hsa-miR-181d-5p 0 0 1
chr8:140637144|140637283 hsa-miR-181d-3p 0 0 1
chr8:140637144|140637283 hsa-miR-519d-5p 0 0 1
chr8:140637144|140637283 hsa-miR-519d-3p 0 0 1
chr8:140637144|140637283 hsa-miR-559 0 0 1
chr8:140637144|140637283 hsa-miR-541-5p 0 0 1
chr8:140637144|140637283 hsa-miR-541-3p 0 0 1
chr8:140637144|140637283 hsa-miR-543 0 0 1
chr8:140637144|140637283 hsa-miR-548j-5p 0 0 1
chr8:140637144|140637283 hsa-miR-548j-3p 0 0 1
chr8:140637144|140637283 hsa-miR-548k 0 0 1
chr8:140637144|140637283 hsa-miR-548l 0 0 1
chr8:140637144|140637283 hsa-miR-548n 0 0 1
chr8:140637144|140637283 hsa-miR-548m 0 0 1
chr8:140637144|140637283 hsa-miR-139-5p 0 0 1
chr8:140637144|140637283 hsa-miR-142-5p 0 0 1
chr8:140637144|140637283 hsa-miR-654-5p 1 0 1
chr8:140637144|140637283 hsa-miR-513a-3p 0 0 1
chr8:140637144|140637283 hsa-miR-548b-5p 0 0 1
chr8:140637144|140637283 hsa-miR-548d-5p 0 0 1
chr8:140637144|140637283 hsa-miR-519b-3p 0 0 1
chr8:140637144|140637283 hsa-miR-519c-3p 0 0 1
chr8:140637144|140637283 hsa-miR-548c-3p 0 0 1
chr8:140637144|140637283 hsa-miR-548c-5p 0 0 1
chr8:140637144|140637283 hsa-miR-548a-5p 0 0 1
chr8:140637144|140637283 hsa-miR-548i 0 0 1
chr8:140637144|140637283 hsa-miR-181a 0 0 1
chr8:140637144|140637283 hsa-miR-181b 0 0 1
chr8:140637144|140637283 hsa-miR-519a 0 0 1
chr8:140637144|140637283 hsa-miR-548h 0 0 1
chr8:140637144|140637283 hsa-miR-101 0 0 1
chr8:140637144|140637283 hsa-miR-936 1 0 0
chr8:140637144|140637283 hsa-miR-1294 0 1 0
chr8:140637144|140637283 hsa-miR-3147 1 0 0
chr8:140637144|140637283 hsa-miR-4271 1 0 0
chr8:140637144|140637283 hsa-miR-3945 1 0 0
chr8:140637144|140637283 hsa-miR-4450 1 0 0
chr8:140637144|140637283 hsa-miR-3689c 1 0 0
chr8:140637144|140637283 hsa-miR-4539 1 0 0
chr8:140637144|140637283 hsa-miR-4689 1 0 0
chr8:140637144|140637283 hsa-miR-4739 1 0 0
chr8:140637144|140637283 hsa-miR-4754 1 0 0
chr8:140637144|140637283 hsa-miR-6860 1 0 0
chr8:140637144|140637283 hsa-miR-8089 1 0 0
chr8:140637144|140637283 hsa-miR-9500 1 1 0
chr8:140637144|140637283 hsa-miR-92a-2-5p 1 0 0
chr8:140637144|140637283 hsa-miR-3150a-3p 1 1 0
chr8:140637144|140637283 hsa-miR-6861-5p 1 0 0
chr8:140637144|140637283 hsa-miR-7106-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6894-5p 1 0 0
chr8:140637144|140637283 hsa-miR-7851-3p 1 0 0
chr8:140637144|140637283 hsa-miR-3192-5p 1 0 0
chr8:140637144|140637283 hsa-miR-3150b-3p 1 0 0
chr8:140637144|140637283 hsa-miR-6810-5p 1 0 0
chr8:140637144|140637283 hsa-miR-3186-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6826-5p 0 1 0
chr8:140637144|140637283 hsa-miR-6720-3p 1 0 0
chr8:140637144|140637283 hsa-miR-1273h-5p 1 0 0
chr8:140637144|140637283 hsa-miR-3689b-3p 1 0 0
chr8:140637144|140637283 hsa-miR-6769b-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6778-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6812-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6870-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6726-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6754-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6756-5p 1 1 0
chr8:140637144|140637283 hsa-miR-6769a-5p 1 0 0
chr8:140637144|140637283 hsa-miR-7107-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6763-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6779-5p 1 0 0
chr8:140637144|140637283 hsa-miR-5196-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6862-5p 1 0 0
chr8:140637144|140637283 hsa-miR-328-5p 1 0 0
chr8:140637144|140637283 hsa-miR-3689a-3p 1 0 0
chr8:140637144|140637283 hsa-miR-6885-5p 1 0 0
chr8:140637144|140637283 hsa-miR-939-5p 1 0 0
chr8:140637144|140637283 hsa-miR-377-5p 0 1 0
chr8:140637144|140637283 hsa-miR-4700-5p 1 0 0
chr8:140637144|140637283 hsa-miR-4646-5p 1 1 0
chr8:140637144|140637283 hsa-miR-4747-5p 1 0 0
chr8:140637144|140637283 hsa-miR-6785-5p 1 0 0
chr8:140637144|140637283 hsa-miR-4667-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:140637144|140637283
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MYLYCSISRKFLNNHECYHFPIYEPCNLINLPSSQMPT
Nucleotide Sequence CTGTACCTTTACTGTAGTATTTCACGGAAATTTTTAAATAATCATGAATGTTACCACTTTCCTATTTATGAACCATGCAACCTCATCAATCTTCCCAGTTCGCAGATGCCCACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab