CircRNA Information

General Information
circRNA Basic Information
CircID chr8:141192335|141192579
Strand -
CircType exon
Host Gene ENSG00000105339.9;
Algorism CIRI2;
Sequence AGGTAACAGCATCATGGTCATGAAAATGAATGGATCCCTCCATCAAGAATTGAAGATTGAGGAGAACTTCAAAGACACCAGTACCTCCTTCCTGGCCTTCCAGCTCCTTCCTGAGGTATCCCAGCAGGGGCTGTGGGCCCAGCATGTGCGTGGCCCGGGGCCCATAGCCCACACCGTGCCCTGCGTTTCAGGAGGAGCAGCTGTGGGCGGCCTGTGCAGGACGCAGCGAGGTTTACATCTGGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:141192335|141192579 hsa-miR-30a-5p 0 0 1
chr8:141192335|141192579 hsa-miR-30a-3p 0 0 1
chr8:141192335|141192579 hsa-miR-30d-5p 0 0 1
chr8:141192335|141192579 hsa-miR-30d-3p 0 0 1
chr8:141192335|141192579 hsa-miR-30b-5p 0 0 1
chr8:141192335|141192579 hsa-miR-30b-3p 0 0 1
chr8:141192335|141192579 hsa-miR-30e-5p 0 0 1
chr8:141192335|141192579 hsa-miR-30e-3p 0 0 1
chr8:141192335|141192579 hsa-miR-370-5p 0 0 1
chr8:141192335|141192579 hsa-miR-370-3p 0 0 1
chr8:141192335|141192579 hsa-miR-433-5p 0 0 1
chr8:141192335|141192579 hsa-miR-433-3p 0 0 1
chr8:141192335|141192579 hsa-miR-511-5p 0 0 1
chr8:141192335|141192579 hsa-miR-511-3p 0 0 1
chr8:141192335|141192579 hsa-miR-526b-5p 0 0 1
chr8:141192335|141192579 hsa-miR-526b-3p 0 0 1
chr8:141192335|141192579 hsa-miR-564 0 1 1
chr8:141192335|141192579 hsa-miR-573 0 0 1
chr8:141192335|141192579 hsa-miR-579-5p 0 0 1
chr8:141192335|141192579 hsa-miR-579-3p 0 0 1
chr8:141192335|141192579 hsa-miR-591 0 0 1
chr8:141192335|141192579 hsa-miR-639 0 1 1
chr8:141192335|141192579 hsa-miR-708-5p 0 0 1
chr8:141192335|141192579 hsa-miR-708-3p 0 0 1
chr8:141192335|141192579 hsa-miR-873-5p 0 0 1
chr8:141192335|141192579 hsa-miR-873-3p 0 0 1
chr8:141192335|141192579 hsa-miR-1322 0 0 1
chr8:141192335|141192579 hsa-miR-296-5p 0 0 1
chr8:141192335|141192579 hsa-miR-28-5p 0 0 1
chr8:141192335|141192579 hsa-miR-875-5p 0 0 1
chr8:141192335|141192579 hsa-miR-30c 0 0 1
chr8:141192335|141192579 hsa-miR-664 0 0 1
chr8:141192335|141192579 hsa-miR-720 0 0 1
chr8:141192335|141192579 hsa-miR-663a 1 0 0
chr8:141192335|141192579 hsa-miR-762 1 0 0
chr8:141192335|141192579 hsa-miR-765 1 1 0
chr8:141192335|141192579 hsa-miR-1538 1 0 0
chr8:141192335|141192579 hsa-miR-3141 1 0 0
chr8:141192335|141192579 hsa-miR-4322 0 1 0
chr8:141192335|141192579 hsa-miR-4268 0 1 0
chr8:141192335|141192579 hsa-miR-3652 1 0 0
chr8:141192335|141192579 hsa-miR-4425 0 1 0
chr8:141192335|141192579 hsa-miR-4441 0 1 0
chr8:141192335|141192579 hsa-miR-4476 0 1 0
chr8:141192335|141192579 hsa-miR-4498 1 0 0
chr8:141192335|141192579 hsa-miR-4533 1 1 0
chr8:141192335|141192579 hsa-miR-1587 1 0 0
chr8:141192335|141192579 hsa-miR-4673 1 0 0
chr8:141192335|141192579 hsa-miR-4674 1 0 0
chr8:141192335|141192579 hsa-miR-4739 1 1 0
chr8:141192335|141192579 hsa-miR-6085 1 0 0
chr8:141192335|141192579 hsa-miR-6125 1 0 0
chr8:141192335|141192579 hsa-miR-6127 1 0 0
chr8:141192335|141192579 hsa-miR-6133 1 0 0
chr8:141192335|141192579 hsa-miR-12121 0 1 0
chr8:141192335|141192579 hsa-miR-134-3p 0 1 0
chr8:141192335|141192579 hsa-miR-671-5p 1 0 0
chr8:141192335|141192579 hsa-miR-7106-5p 1 0 0
chr8:141192335|141192579 hsa-miR-210-5p 0 1 0
chr8:141192335|141192579 hsa-miR-6799-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4722-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4753-5p 0 1 0
chr8:141192335|141192579 hsa-miR-6732-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6760-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6874-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4640-5p 1 1 0
chr8:141192335|141192579 hsa-miR-1908-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6830-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6895-5p 0 1 0
chr8:141192335|141192579 hsa-miR-660-3p 0 1 0
chr8:141192335|141192579 hsa-miR-3180-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4632-3p 1 1 0
chr8:141192335|141192579 hsa-miR-6856-3p 0 1 0
chr8:141192335|141192579 hsa-miR-5589-3p 0 1 0
chr8:141192335|141192579 hsa-miR-5587-3p 0 1 0
chr8:141192335|141192579 hsa-miR-4777-3p 0 1 0
chr8:141192335|141192579 hsa-miR-1207-5p 1 0 0
chr8:141192335|141192579 hsa-miR-1233-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4763-3p 1 1 0
chr8:141192335|141192579 hsa-miR-6778-5p 1 0 0
chr8:141192335|141192579 hsa-miR-5001-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6726-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6754-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6813-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6851-5p 1 0 0
chr8:141192335|141192579 hsa-miR-11181-3p 1 0 0
chr8:141192335|141192579 hsa-miR-1249-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6722-3p 1 0 0
chr8:141192335|141192579 hsa-miR-6797-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6879-5p 1 0 0
chr8:141192335|141192579 hsa-miR-3620-5p 1 0 0
chr8:141192335|141192579 hsa-miR-5196-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6780b-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6836-5p 0 1 0
chr8:141192335|141192579 hsa-miR-4685-5p 0 1 0
chr8:141192335|141192579 hsa-miR-4726-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6858-5p 1 0 0
chr8:141192335|141192579 hsa-miR-10396a-3p 0 1 0
chr8:141192335|141192579 hsa-miR-10396b-3p 0 1 0
chr8:141192335|141192579 hsa-miR-6856-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6799-3p 1 0 0
chr8:141192335|141192579 hsa-miR-6773-5p 0 1 0
chr8:141192335|141192579 hsa-miR-4646-5p 1 0 0
chr8:141192335|141192579 hsa-miR-4747-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6876-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6785-5p 1 0 0
chr8:141192335|141192579 hsa-miR-6724-5p 1 1 0
chr8:141192335|141192579 hsa-miR-6791-5p 1 0 0
chr8:141192335|141192579 hsa-miR-10392-3p 1 0 0
chr8:141192335|141192579 hsa-miR-619-5p 0 1 0
chr8:141192335|141192579 hsa-miR-6506-5p 0 1 0
chr8:141192335|141192579 hsa-miR-3150a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:141192335|141192579
ORF Type ORF1
Protein Length 77
Nucleotide Length 231
Protein Sequence MVMKMNGSLHQELKIEENFKDTSTSFLAFQLLPEVSQQGLWAQHVRGPGPIAHTVPCVSGGAAVGGLCRTQRGLHLE
Nucleotide Sequence ATGGTCATGAAAATGAATGGATCCCTCCATCAAGAATTGAAGATTGAGGAGAACTTCAAAGACACCAGTACCTCCTTCCTGGCCTTCCAGCTCCTTCCTGAGGTATCCCAGCAGGGGCTGTGGGCCCAGCATGTGCGTGGCCCGGGGCCCATAGCCCACACCGTGCCCTGCGTTTCAGGAGGAGCAGCTGTGGGCGGCCTGTGCAGGACGCAGCGAGGTTTACATCTGGAG
CircID chr8:141192335|141192579
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MRRTSKTPVPPSWPSSSFLRYPSRGCGPSMCVARGP
Nucleotide Sequence TTGAGGAGAACTTCAAAGACACCAGTACCTCCTTCCTGGCCTTCCAGCTCCTTCCTGAGGTATCCCAGCAGGGGCTGTGGGCCCAGCATGTGCGTGGCCCGGGGCCCATAG
CircID chr8:141192335|141192579
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MLLLKRRARCGLWAPGHAHAGPTAPAGIPQEGAGRPGRRYWCL
Nucleotide Sequence CTGCTCCTCCTGAAACGCAGGGCACGGTGTGGGCTATGGGCCCCGGGCCACGCACATGCTGGGCCCACAGCCCCTGCTGGGATACCTCAGGAAGGAGCTGGAAGGCCAGGAAGGAGGTACTGGTGTCTTTGA
CircID chr8:141192335|141192579
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MLGPQPLLGYLRKELEGQEGGTGVFEVLLNLQFLMEGSIHFHDHDAVT
Nucleotide Sequence ATGCTGGGCCCACAGCCCCTGCTGGGATACCTCAGGAAGGAGCTGGAAGGCCAGGAAGGAGGTACTGGTGTCTTTGAAGTTCTCCTCAATCTTCAATTCTTGATGGAGGGATCCATTCATTTTCATGACCATGATGCTGTTACC
CircID chr8:141192335|141192579
ORF Type ORF5
Protein Length 58
Nucleotide Length 177
Protein Sequence MHRPPTAAPPETQGTVWAMGPGPRTCWAHSPCWDTSGRSWKARKEVLVSLKFSSIFNS
Nucleotide Sequence CTGCACAGGCCGCCCACAGCTGCTCCTCCTGAAACGCAGGGCACGGTGTGGGCTATGGGCCCCGGGCCACGCACATGCTGGGCCCACAGCCCCTGCTGGGATACCTCAGGAAGGAGCTGGAAGGCCAGGAAGGAGGTACTGGTGTCTTTGAAGTTCTCCTCAATCTTCAATTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab