CircRNA Information

General Information
circRNA Basic Information
CircID chr8:141243011|141243114
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCAAGACTTTGCTGGGAGCCACAGAAAAACCTGCTAGAGTTGGGAGTATTACTCCTGCTCCGGGGTCCCTCCACACACTGTCAGTCCCCCTCTGAGCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:141243011|141243114 hsa-miR-200b-5p 0 0 1
chr8:141243011|141243114 hsa-miR-200b-3p 0 0 1
chr8:141243011|141243114 hsa-miR-150-5p 0 0 1
chr8:141243011|141243114 hsa-miR-150-3p 0 0 1
chr8:141243011|141243114 hsa-miR-200c-5p 0 0 1
chr8:141243011|141243114 hsa-miR-200c-3p 0 0 1
chr8:141243011|141243114 hsa-miR-429 0 0 1
chr8:141243011|141243114 hsa-miR-432-5p 0 0 1
chr8:141243011|141243114 hsa-miR-432-3p 0 0 1
chr8:141243011|141243114 hsa-miR-545-5p 0 0 1
chr8:141243011|141243114 hsa-miR-545-3p 0 0 1
chr8:141243011|141243114 hsa-miR-618 0 0 1
chr8:141243011|141243114 hsa-miR-657 0 0 1
chr8:141243011|141243114 hsa-miR-1264 0 0 1
chr8:141243011|141243114 hsa-miR-1203 0 1 1
chr8:141243011|141243114 hsa-miR-1251-5p 0 0 1
chr8:141243011|141243114 hsa-miR-1251-3p 0 0 1
chr8:141243011|141243114 hsa-miR-644 0 0 1
chr8:141243011|141243114 hsa-miR-147 0 0 1
chr8:141243011|141243114 hsa-miR-198 1 0 0
chr8:141243011|141243114 hsa-miR-638 1 0 0
chr8:141243011|141243114 hsa-miR-3154 1 0 0
chr8:141243011|141243114 hsa-miR-3907 1 1 0
chr8:141243011|141243114 hsa-miR-3911 1 1 0
chr8:141243011|141243114 hsa-miR-4513 1 1 0
chr8:141243011|141243114 hsa-miR-4515 1 0 0
chr8:141243011|141243114 hsa-miR-4656 1 0 0
chr8:141243011|141243114 hsa-miR-4736 1 0 0
chr8:141243011|141243114 hsa-miR-4741 1 0 0
chr8:141243011|141243114 hsa-miR-5698 1 0 0
chr8:141243011|141243114 hsa-miR-8052 1 0 0
chr8:141243011|141243114 hsa-miR-12119 1 0 0
chr8:141243011|141243114 hsa-miR-8071 1 0 0
chr8:141243011|141243114 hsa-miR-7847-3p 1 1 0
chr8:141243011|141243114 hsa-miR-6867-5p 0 1 0
chr8:141243011|141243114 hsa-miR-4722-5p 0 1 0
chr8:141243011|141243114 hsa-miR-185-3p 1 0 0
chr8:141243011|141243114 hsa-miR-6805-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6798-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6782-5p 1 0 0
chr8:141243011|141243114 hsa-miR-615-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6786-5p 1 0 0
chr8:141243011|141243114 hsa-miR-7109-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6847-5p 1 0 0
chr8:141243011|141243114 hsa-miR-149-3p 1 0 0
chr8:141243011|141243114 hsa-miR-4740-5p 1 0 0
chr8:141243011|141243114 hsa-miR-5010-5p 1 0 0
chr8:141243011|141243114 hsa-miR-873-3p 1 0 0
chr8:141243011|141243114 hsa-miR-6801-5p 1 0 0
chr8:141243011|141243114 hsa-miR-888-3p 0 1 0
chr8:141243011|141243114 hsa-miR-329-5p 0 1 0
chr8:141243011|141243114 hsa-miR-6778-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6851-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6780a-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6797-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6875-5p 1 1 0
chr8:141243011|141243114 hsa-miR-7111-5p 1 0 0
chr8:141243011|141243114 hsa-miR-10396b-5p 1 0 0
chr8:141243011|141243114 hsa-miR-10526-3p 1 0 0
chr8:141243011|141243114 hsa-miR-328-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6794-5p 1 1 0
chr8:141243011|141243114 hsa-miR-6795-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6846-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6848-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6858-5p 1 0 0
chr8:141243011|141243114 hsa-miR-6887-5p 1 1 0
chr8:141243011|141243114 hsa-miR-939-5p 1 0 0
chr8:141243011|141243114 hsa-miR-365a-5p 1 0 0
chr8:141243011|141243114 hsa-miR-365b-5p 1 0 0
chr8:141243011|141243114 hsa-miR-1914-3p 1 0 0
chr8:141243011|141243114 hsa-miR-4665-5p 1 0 0
chr8:141243011|141243114 hsa-miR-4716-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr8:141243011|141243114
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLGATEKPARVGSITPAPGSLHTLSVPL
Nucleotide Sequence TTGCTGGGAGCCACAGAAAAACCTGCTAGAGTTGGGAGTATTACTCCTGCTCCGGGGTCCCTCCACACACTGTCAGTCCCCCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab