CircRNA Information

General Information
circRNA Basic Information
CircID chr8:142347297|142347467
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGCACCCACGAAGAGGCACTGACCAAGGCCCGGAGGGGGCCCAAGTCACAGAGGGAGGGATCCCAAGTCACAGACGCCTCTCAGTGTTTGATGAAGTGAGCCTCCAGCATGGGTCCCCCTCCCAAGAGGGCAGGGCCTGTCCCTCCAGCTCCCGGCAGGCCCTTCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:142347297|142347467 hsa-miR-148a-5p 0 0 1
chr8:142347297|142347467 hsa-miR-148a-3p 0 0 1
chr8:142347297|142347467 hsa-miR-141-5p 0 0 1
chr8:142347297|142347467 hsa-miR-141-3p 0 0 1
chr8:142347297|142347467 hsa-miR-152-5p 0 0 1
chr8:142347297|142347467 hsa-miR-152-3p 0 0 1
chr8:142347297|142347467 hsa-miR-134-5p 0 0 1
chr8:142347297|142347467 hsa-miR-134-3p 0 0 1
chr8:142347297|142347467 hsa-miR-200a-5p 0 0 1
chr8:142347297|142347467 hsa-miR-200a-3p 0 0 1
chr8:142347297|142347467 hsa-miR-148b-5p 0 0 1
chr8:142347297|142347467 hsa-miR-148b-3p 0 0 1
chr8:142347297|142347467 hsa-miR-519e-5p 0 0 1
chr8:142347297|142347467 hsa-miR-519e-3p 0 0 1
chr8:142347297|142347467 hsa-miR-635 0 0 1
chr8:142347297|142347467 hsa-miR-638 0 0 1
chr8:142347297|142347467 hsa-miR-650 0 0 1
chr8:142347297|142347467 hsa-miR-920 0 1 1
chr8:142347297|142347467 hsa-miR-1287-5p 0 0 1
chr8:142347297|142347467 hsa-miR-1287-3p 0 0 1
chr8:142347297|142347467 hsa-miR-1291 0 0 1
chr8:142347297|142347467 hsa-miR-296-5p 0 0 1
chr8:142347297|142347467 hsa-miR-769-3p 1 1 1
chr8:142347297|142347467 hsa-miR-515-3p 0 1 1
chr8:142347297|142347467 hsa-miR-450b-3p 0 0 1
chr8:142347297|142347467 hsa-miR-550 0 0 1
chr8:142347297|142347467 hsa-miR-642 0 0 1
chr8:142347297|142347467 hsa-miR-2861 1 1 0
chr8:142347297|142347467 hsa-miR-3154 1 1 0
chr8:142347297|142347467 hsa-miR-4300 0 1 0
chr8:142347297|142347467 hsa-miR-3135b 0 1 0
chr8:142347297|142347467 hsa-miR-4462 1 0 0
chr8:142347297|142347467 hsa-miR-4516 0 1 0
chr8:142347297|142347467 hsa-miR-4734 1 0 0
chr8:142347297|142347467 hsa-miR-7706 1 0 0
chr8:142347297|142347467 hsa-miR-12126 0 1 0
chr8:142347297|142347467 hsa-miR-3189-5p 0 1 0
chr8:142347297|142347467 hsa-miR-7845-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6770-5p 0 1 0
chr8:142347297|142347467 hsa-miR-3126-5p 0 1 0
chr8:142347297|142347467 hsa-miR-30b-3p 0 1 0
chr8:142347297|142347467 hsa-miR-6735-3p 1 0 0
chr8:142347297|142347467 hsa-miR-7109-5p 0 1 0
chr8:142347297|142347467 hsa-miR-3186-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6749-5p 1 1 0
chr8:142347297|142347467 hsa-miR-149-3p 0 1 0
chr8:142347297|142347467 hsa-miR-2276-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6761-5p 0 1 0
chr8:142347297|142347467 hsa-miR-3173-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6726-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6756-5p 1 0 0
chr8:142347297|142347467 hsa-miR-6774-5p 1 0 0
chr8:142347297|142347467 hsa-miR-6779-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6780a-5p 1 1 0
chr8:142347297|142347467 hsa-miR-6797-5p 0 1 0
chr8:142347297|142347467 hsa-miR-4728-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6780b-5p 0 1 0
chr8:142347297|142347467 hsa-miR-3689a-3p 0 1 0
chr8:142347297|142347467 hsa-miR-6794-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6795-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6846-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6848-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6858-5p 1 0 0
chr8:142347297|142347467 hsa-miR-939-5p 1 0 0
chr8:142347297|142347467 hsa-miR-6785-5p 0 1 0
chr8:142347297|142347467 hsa-miR-5591-5p 0 1 0
chr8:142347297|142347467 hsa-miR-6724-5p 1 1 0
chr8:142347297|142347467 hsa-miR-2682-3p 0 1 0
chr8:142347297|142347467 hsa-miR-6829-3p 1 1 0
chr8:142347297|142347467 hsa-miR-6775-3p 0 1 0
chr8:142347297|142347467 hsa-miR-33b-3p 0 1 0
chr8:142347297|142347467 hsa-miR-6820-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:142347297|142347467
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MTKARRGPKSQREGSQVTDASQCLMK
Nucleotide Sequence CTGACCAAGGCCCGGAGGGGGCCCAAGTCACAGAGGGAGGGATCCCAAGTCACAGACGCCTCTCAGTGTTTGATGAAGTGA
CircID chr8:142347297|142347467
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MEGQALPSWEGDPCWRLTSSNTERRL
Nucleotide Sequence CTGGAGGGACAGGCCCTGCCCTCTTGGGAGGGGGACCCATGCTGGAGGCTCACTTCATCAAACACTGAGAGGCGTCTGTGA
CircID chr8:142347297|142347467
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MPGAGGTGPALLGGGPMLEAHFIKH
Nucleotide Sequence CTGCCGGGAGCTGGAGGGACAGGCCCTGCCCTCTTGGGAGGGGGACCCATGCTGGAGGCTCACTTCATCAAACACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab