CircRNA Information

General Information
circRNA Basic Information
CircID chr8:142735441|142735562
Strand -
CircType exon
Host Gene ENSG00000130193.7;
Algorism CIRI2;
Sequence CGCCACCTTCACACCGTCTGCCCTGGCCACCATCCTGGGCCTGGGGGCTGCCCACAGATGGGCAGTCTCAGCCATACTCTGTTCCAGCTGGAGTAGCCTCCTGACCAGCCTGGCCCACCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:142735441|142735562 hsa-miR-135b-5p 0 0 1
chr8:142735441|142735562 hsa-miR-135b-3p 0 0 1
chr8:142735441|142735562 hsa-miR-493-5p 0 0 1
chr8:142735441|142735562 hsa-miR-493-3p 0 0 1
chr8:142735441|142735562 hsa-miR-766-5p 0 0 1
chr8:142735441|142735562 hsa-miR-766-3p 0 0 1
chr8:142735441|142735562 hsa-miR-541-5p 0 0 1
chr8:142735441|142735562 hsa-miR-541-3p 0 0 1
chr8:142735441|142735562 hsa-miR-654-5p 0 1 1
chr8:142735441|142735562 hsa-miR-508-5p 0 0 1
chr8:142735441|142735562 hsa-miR-361-3p 0 1 1
chr8:142735441|142735562 hsa-miR-1207-3p 0 0 1
chr8:142735441|142735562 hsa-miR-135a 0 0 1
chr8:142735441|142735562 hsa-miR-608 1 0 0
chr8:142735441|142735562 hsa-miR-1293 1 0 0
chr8:142735441|142735562 hsa-miR-1538 1 0 0
chr8:142735441|142735562 hsa-miR-2861 1 0 0
chr8:142735441|142735562 hsa-miR-3138 1 0 0
chr8:142735441|142735562 hsa-miR-3141 1 0 0
chr8:142735441|142735562 hsa-miR-1193 1 1 0
chr8:142735441|142735562 hsa-miR-4296 0 1 0
chr8:142735441|142735562 hsa-miR-4298 1 0 0
chr8:142735441|142735562 hsa-miR-3943 0 1 0
chr8:142735441|142735562 hsa-miR-3135b 1 0 0
chr8:142735441|142735562 hsa-miR-2392 1 1 0
chr8:142735441|142735562 hsa-miR-4651 1 1 0
chr8:142735441|142735562 hsa-miR-4710 1 0 0
chr8:142735441|142735562 hsa-miR-4739 1 0 0
chr8:142735441|142735562 hsa-miR-5090 1 1 0
chr8:142735441|142735562 hsa-miR-6069 1 0 0
chr8:142735441|142735562 hsa-miR-6075 1 0 0
chr8:142735441|142735562 hsa-miR-6081 1 0 0
chr8:142735441|142735562 hsa-miR-6131 0 1 0
chr8:142735441|142735562 hsa-miR-7150 1 0 0
chr8:142735441|142735562 hsa-miR-134-3p 0 1 0
chr8:142735441|142735562 hsa-miR-4435 0 1 0
chr8:142735441|142735562 hsa-miR-6840-3p 0 1 0
chr8:142735441|142735562 hsa-miR-323a-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6861-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6799-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6089 1 0 0
chr8:142735441|142735562 hsa-miR-6757-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6880-5p 1 0 0
chr8:142735441|142735562 hsa-miR-3677-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6842-3p 1 0 0
chr8:142735441|142735562 hsa-miR-197-5p 1 0 0
chr8:142735441|142735562 hsa-miR-8069 1 0 0
chr8:142735441|142735562 hsa-miR-5006-5p 1 1 0
chr8:142735441|142735562 hsa-miR-1226-5p 1 0 0
chr8:142735441|142735562 hsa-miR-1229-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6784-5p 1 0 0
chr8:142735441|142735562 hsa-miR-4640-5p 1 1 0
chr8:142735441|142735562 hsa-miR-6753-5p 1 0 0
chr8:142735441|142735562 hsa-miR-1228-5p 1 0 0
chr8:142735441|142735562 hsa-miR-296-3p 1 0 0
chr8:142735441|142735562 hsa-miR-6501-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6781-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6895-5p 1 0 0
chr8:142735441|142735562 hsa-miR-7113-5p 1 0 0
chr8:142735441|142735562 hsa-miR-5002-3p 0 1 0
chr8:142735441|142735562 hsa-miR-4763-3p 1 0 0
chr8:142735441|142735562 hsa-miR-6769b-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6787-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6775-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6743-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6754-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6756-5p 1 1 0
chr8:142735441|142735562 hsa-miR-6851-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6879-5p 1 1 0
chr8:142735441|142735562 hsa-miR-1915-3p 1 0 0
chr8:142735441|142735562 hsa-miR-4632-5p 1 1 0
chr8:142735441|142735562 hsa-miR-4649-5p 1 0 0
chr8:142735441|142735562 hsa-miR-4685-5p 1 1 0
chr8:142735441|142735562 hsa-miR-4726-5p 1 1 0
chr8:142735441|142735562 hsa-miR-6735-5p 1 1 0
chr8:142735441|142735562 hsa-miR-6795-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6846-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6887-5p 1 0 0
chr8:142735441|142735562 hsa-miR-3187-5p 1 0 0
chr8:142735441|142735562 hsa-miR-4436b-3p 0 1 0
chr8:142735441|142735562 hsa-miR-6845-5p 1 0 0
chr8:142735441|142735562 hsa-miR-6764-5p 1 1 0
chr8:142735441|142735562 hsa-miR-664a-5p 1 0 0
chr8:142735441|142735562 hsa-miR-708-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:142735441|142735562
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MATILGLGAAHRWAVSAILCSSWSSLLTSLAHP
Nucleotide Sequence CTGGCCACCATCCTGGGCCTGGGGGCTGCCCACAGATGGGCAGTCTCAGCCATACTCTGTTCCAGCTGGAGTAGCCTCCTGACCAGCCTGGCCCACCCT
CircID chr8:142735441|142735562
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MPWPPSWAWGLPTDGQSQPYSVPAGVAS
Nucleotide Sequence CTGCCCTGGCCACCATCCTGGGCCTGGGGGCTGCCCACAGATGGGCAGTCTCAGCCATACTCTGTTCCAGCTGGAGTAGCCTCCTGA
CircID chr8:142735441|142735562
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MVRRLLQLEQSMAETAHLWAAPRPRMVARADGVKVA
Nucleotide Sequence CTGGTCAGGAGGCTACTCCAGCTGGAACAGAGTATGGCTGAGACTGCCCATCTGTGGGCAGCCCCCAGGCCCAGGATGGTGGCCAGGGCAGACGGTGTGAAGGTGGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab