CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143253025|143253204
Strand +
CircType exon
Host Gene ENSG00000181638.16;
Algorism CIRI2;
Sequence CGCCCCGTCCCTGCTGCGCTGGTGCTGACTGTGCCTGCAGTTGACTGTGCCTGCAGTTGACTGTGCCTGGAGTCTACAATCCAGGTCGGCCAAACGTCCCAGCAAAGTCCTTCAAAGCAACTCTTCCGATCCAGGATCACACGTCACACGTGCTCTGATGCCTGCTTCTGAACAATTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143253025|143253204 hsa-miR-29a-5p 0 0 1
chr8:143253025|143253204 hsa-miR-29a-3p 0 0 1
chr8:143253025|143253204 hsa-miR-214-5p 0 0 1
chr8:143253025|143253204 hsa-miR-214-3p 0 0 1
chr8:143253025|143253204 hsa-miR-29c-5p 0 0 1
chr8:143253025|143253204 hsa-miR-29c-3p 0 0 1
chr8:143253025|143253204 hsa-miR-619-5p 0 0 1
chr8:143253025|143253204 hsa-miR-619-3p 0 0 1
chr8:143253025|143253204 hsa-miR-631 -4 0 1
chr8:143253025|143253204 hsa-miR-1226-5p 0 0 1
chr8:143253025|143253204 hsa-miR-1226-3p 0 0 1
chr8:143253025|143253204 hsa-miR-1205 4 0 1
chr8:143253025|143253204 hsa-miR-1252-5p 0 0 1
chr8:143253025|143253204 hsa-miR-1252-3p 0 0 1
chr8:143253025|143253204 hsa-miR-508-5p 3 1 1
chr8:143253025|143253204 hsa-miR-509-3-5p 2 1 1
chr8:143253025|143253204 hsa-miR-509-5p 0 1 1
chr8:143253025|143253204 hsa-miR-508-3p 0 1 1
chr8:143253025|143253204 hsa-miR-219-2-3p 0 0 1
chr8:143253025|143253204 hsa-miR-29b 0 0 1
chr8:143253025|143253204 hsa-miR-564 -10 1 0
chr8:143253025|143253204 hsa-miR-4269 -11 1 0
chr8:143253025|143253204 hsa-miR-4418 -3 1 0
chr8:143253025|143253204 hsa-miR-4673 3 1 0
chr8:143253025|143253204 hsa-miR-4734 -12 1 0
chr8:143253025|143253204 hsa-miR-378j -4 1 0
chr8:143253025|143253204 hsa-miR-3622a-5p -7 1 0
chr8:143253025|143253204 hsa-miR-6806-5p -12 1 0
chr8:143253025|143253204 hsa-miR-4711-5p -11 1 0
chr8:143253025|143253204 hsa-miR-92b-5p -8 1 0
chr8:143253025|143253204 hsa-miR-3065-3p -13 1 0
chr8:143253025|143253204 hsa-miR-6511b-5p -13 1 0
chr8:143253025|143253204 hsa-miR-10394-5p -4 1 0
chr8:143253025|143253204 hsa-miR-6715b-5p -6 1 0
chr8:143253025|143253204 hsa-miR-6811-5p -4 1 0
chr8:143253025|143253204 hsa-miR-6839-5p -8 1 0
chr8:143253025|143253204 hsa-miR-5582-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143253025|143253204
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MCLESTIQVGQTSQQSPSKQLFRSRITRHTCSDACF
Nucleotide Sequence CTGTGCCTGGAGTCTACAATCCAGGTCGGCCAAACGTCCCAGCAAAGTCCTTCAAAGCAACTCTTCCGATCCAGGATCACACGTCACACGTGCTCTGATGCCTGCTTCTGA
CircID chr8:143253025|143253204
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MCLQLTVPAVDCAWSLQSRSAKRPSKVLQSNSSDPGSHVTRALMPASEQF
Nucleotide Sequence CTGTGCCTGCAGTTGACTGTGCCTGCAGTTGACTGTGCCTGGAGTCTACAATCCAGGTCGGCCAAACGTCCCAGCAAAGTCCTTCAAAGCAACTCTTCCGATCCAGGATCACACGTCACACGTGCTCTGATGCCTGCTTCTGAACAATTC
CircID chr8:143253025|143253204
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MCLQLTVPGVYNPGRPNVPAKSFKATLPIQDHTSHVL
Nucleotide Sequence CTGTGCCTGCAGTTGACTGTGCCTGGAGTCTACAATCCAGGTCGGCCAAACGTCCCAGCAAAGTCCTTCAAAGCAACTCTTCCGATCCAGGATCACACGTCACACGTGCTCTGA
CircID chr8:143253025|143253204
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MLGRLADLDCRLQAQSTAGTVNCRHSQHQRSRDGA
Nucleotide Sequence TTGCTGGGACGTTTGGCCGACCTGGATTGTAGACTCCAGGCACAGTCAACTGCAGGCACAGTCAACTGCAGGCACAGTCAGCACCAGCGCAGCAGGGACGGGGCG
CircID chr8:143253025|143253204
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MDRKSCFEGLCWDVWPTWIVDSRHSQLQAQSTAGTVSTSAAGTG
Nucleotide Sequence CTGGATCGGAAGAGTTGCTTTGAAGGACTTTGCTGGGACGTTTGGCCGACCTGGATTGTAGACTCCAGGCACAGTCAACTGCAGGCACAGTCAACTGCAGGCACAGTCAGCACCAGCGCAGCAGGGACGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab