CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143267949|143268089
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGTAAAAGGGCCTGCTCGATCACCCCGACCCTGGCTTGGCCCCCAGGACTGAGCAGAGGCGACCATCACAGCGTGGACGCCCCTTCACCCCCAGGGACGCACAAACTCTGAGCTCCAGACTGAAGGGGGAAGGGCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143267949|143268089 hsa-miR-210-5p 0 0 1
chr8:143267949|143268089 hsa-miR-210-3p 0 0 1
chr8:143267949|143268089 hsa-miR-622 0 1 1
chr8:143267949|143268089 hsa-miR-637 1 1 1
chr8:143267949|143268089 hsa-miR-147b-5p 0 0 1
chr8:143267949|143268089 hsa-miR-147b-3p 0 0 1
chr8:143267949|143268089 hsa-miR-938 0 0 1
chr8:143267949|143268089 hsa-miR-1281 0 0 1
chr8:143267949|143268089 hsa-miR-767-3p 0 0 1
chr8:143267949|143268089 hsa-miR-455-3p 0 0 1
chr8:143267949|143268089 hsa-miR-369-5p 0 0 1
chr8:143267949|143268089 hsa-miR-886-5p 0 0 1
chr8:143267949|143268089 hsa-miR-516b 0 0 1
chr8:143267949|143268089 hsa-miR-608 1 0 0
chr8:143267949|143268089 hsa-miR-2861 1 0 0
chr8:143267949|143268089 hsa-miR-4651 1 0 0
chr8:143267949|143268089 hsa-miR-4734 1 0 0
chr8:143267949|143268089 hsa-miR-7974 1 1 0
chr8:143267949|143268089 hsa-miR-8089 1 0 0
chr8:143267949|143268089 hsa-miR-9901 0 1 0
chr8:143267949|143268089 hsa-miR-4731-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6854-5p 0 1 0
chr8:143267949|143268089 hsa-miR-1227-5p 1 0 0
chr8:143267949|143268089 hsa-miR-8069 1 0 0
chr8:143267949|143268089 hsa-miR-6776-5p 1 0 0
chr8:143267949|143268089 hsa-miR-3180-3p 1 0 0
chr8:143267949|143268089 hsa-miR-6728-3p 0 1 0
chr8:143267949|143268089 hsa-miR-5006-5p 1 0 0
chr8:143267949|143268089 hsa-miR-1343-3p 0 1 0
chr8:143267949|143268089 hsa-miR-6852-5p 0 1 0
chr8:143267949|143268089 hsa-miR-5088-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6784-5p 1 0 0
chr8:143267949|143268089 hsa-miR-296-3p 1 0 0
chr8:143267949|143268089 hsa-miR-4787-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6789-5p 1 0 0
chr8:143267949|143268089 hsa-miR-3189-3p 0 1 0
chr8:143267949|143268089 hsa-miR-6886-3p 0 1 0
chr8:143267949|143268089 hsa-miR-3670 0 1 0
chr8:143267949|143268089 hsa-miR-6851-3p 0 1 0
chr8:143267949|143268089 hsa-miR-6734-3p 0 1 0
chr8:143267949|143268089 hsa-miR-371b-3p 0 1 0
chr8:143267949|143268089 hsa-miR-6812-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6816-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6737-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6756-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6803-5p 1 1 0
chr8:143267949|143268089 hsa-miR-6819-5p 1 0 0
chr8:143267949|143268089 hsa-miR-7110-5p 0 1 0
chr8:143267949|143268089 hsa-miR-6722-3p 1 0 0
chr8:143267949|143268089 hsa-miR-6751-5p 1 1 0
chr8:143267949|143268089 hsa-miR-1237-5p 1 0 0
chr8:143267949|143268089 hsa-miR-328-5p 1 0 0
chr8:143267949|143268089 hsa-miR-4685-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6846-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6848-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6845-5p 0 1 0
chr8:143267949|143268089 hsa-miR-3940-5p 1 0 0
chr8:143267949|143268089 hsa-miR-4665-5p 1 0 0
chr8:143267949|143268089 hsa-miR-5591-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6791-5p 1 1 0
chr8:143267949|143268089 hsa-miR-6762-5p 1 0 0
chr8:143267949|143268089 hsa-miR-6764-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143267949|143268089
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MLDHPDPGLAPRTEQRRPSQRGRPFTPRDAQTLSSRLKGEGH
Nucleotide Sequence CTGCTCGATCACCCCGACCCTGGCTTGGCCCCCAGGACTGAGCAGAGGCGACCATCACAGCGTGGACGCCCCTTCACCCCCAGGGACGCACAAACTCTGAGCTCCAGACTGAAGGGGGAAGGGCAC
CircID chr8:143267949|143268089
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MAWPPGLSRGDHHSVDAPSPPGTHKL
Nucleotide Sequence CTGGCTTGGCCCCCAGGACTGAGCAGAGGCGACCATCACAGCGTGGACGCCCCTTCACCCCCAGGGACGCACAAACTCTGA
CircID chr8:143267949|143268089
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MELRVCASLGVKGRPRCDGRLCSVLGAKPGSG
Nucleotide Sequence CTGGAGCTCAGAGTTTGTGCGTCCCTGGGGGTGAAGGGGCGTCCACGCTGTGATGGTCGCCTCTGCTCAGTCCTGGGGGCCAAGCCAGGGTCGGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab