CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143574986|143575229
Strand -
CircType exon
Host Gene ENSG00000255050.1;
Algorism CIRI2;
Sequence CTGGTACTGTGCAGGGCTCCGCAGCCGCCTGTGCTCAGGGCTGAGTCGGCTCAGGGACAGCTGGGCCAAGGCTCTAGACTCTGCCAGGGATGGGAGCGGCTCACACAGCTGTCCCTGCTGGAGGCAGAGCCGCAGTAGTGGCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143574986|143575229 hsa-miR-214-5p 0 0 1
chr8:143574986|143575229 hsa-miR-214-3p 0 0 1
chr8:143574986|143575229 hsa-miR-328-5p 0 0 1
chr8:143574986|143575229 hsa-miR-328-3p 0 0 1
chr8:143574986|143575229 hsa-miR-604 0 1 1
chr8:143574986|143575229 hsa-miR-658 0 0 1
chr8:143574986|143575229 hsa-miR-766-5p 0 0 1
chr8:143574986|143575229 hsa-miR-766-3p 0 0 1
chr8:143574986|143575229 hsa-miR-760 0 1 1
chr8:143574986|143575229 hsa-miR-512-5p 0 1 1
chr8:143574986|143575229 hsa-miR-338-3p 0 0 1
chr8:143574986|143575229 hsa-miR-518d-5p 0 0 1
chr8:143574986|143575229 hsa-miR-519b-5p 0 0 1
chr8:143574986|143575229 hsa-miR-519c-5p 0 0 1
chr8:143574986|143575229 hsa-miR-520c-5p 0 0 1
chr8:143574986|143575229 hsa-miR-125a-5p 0 1 1
chr8:143574986|143575229 hsa-miR-1233 0 0 1
chr8:143574986|143575229 hsa-miR-125b 0 0 1
chr8:143574986|143575229 hsa-miR-526a 0 0 1
chr8:143574986|143575229 hsa-miR-101 0 0 1
chr8:143574986|143575229 hsa-miR-602 1 0 0
chr8:143574986|143575229 hsa-miR-663a 1 0 0
chr8:143574986|143575229 hsa-miR-761 0 1 0
chr8:143574986|143575229 hsa-miR-663b 0 1 0
chr8:143574986|143575229 hsa-miR-3196 1 0 0
chr8:143574986|143575229 hsa-miR-4319 0 1 0
chr8:143574986|143575229 hsa-miR-3937 1 1 0
chr8:143574986|143575229 hsa-miR-4479 1 0 0
chr8:143574986|143575229 hsa-miR-4530 0 1 0
chr8:143574986|143575229 hsa-miR-4537 0 1 0
chr8:143574986|143575229 hsa-miR-3960 1 0 0
chr8:143574986|143575229 hsa-miR-4706 0 1 0
chr8:143574986|143575229 hsa-miR-4730 1 0 0
chr8:143574986|143575229 hsa-miR-8073 0 1 0
chr8:143574986|143575229 hsa-miR-8089 1 0 0
chr8:143574986|143575229 hsa-miR-11400 0 1 0
chr8:143574986|143575229 hsa-miR-211-3p 0 1 0
chr8:143574986|143575229 hsa-miR-3194-3p 0 1 0
chr8:143574986|143575229 hsa-miR-212-5p 0 1 0
chr8:143574986|143575229 hsa-miR-6720-5p 1 0 0
chr8:143574986|143575229 hsa-miR-25-5p 0 1 0
chr8:143574986|143575229 hsa-miR-7845-5p 0 1 0
chr8:143574986|143575229 hsa-miR-5001-3p 0 1 0
chr8:143574986|143575229 hsa-miR-6743-3p 1 1 0
chr8:143574986|143575229 hsa-miR-6741-3p 0 1 0
chr8:143574986|143575229 hsa-miR-1296-5p 0 1 0
chr8:143574986|143575229 hsa-miR-6868-5p 0 1 0
chr8:143574986|143575229 hsa-miR-6770-3p 1 0 0
chr8:143574986|143575229 hsa-miR-670-5p 0 1 0
chr8:143574986|143575229 hsa-miR-5007-5p 0 1 0
chr8:143574986|143575229 hsa-miR-10400-5p 1 0 0
chr8:143574986|143575229 hsa-miR-4763-3p 0 1 0
chr8:143574986|143575229 hsa-miR-5189-5p 1 1 0
chr8:143574986|143575229 hsa-miR-6836-5p 1 0 0
chr8:143574986|143575229 hsa-miR-6799-3p 0 1 0
chr8:143574986|143575229 hsa-miR-6762-5p 1 0 0
chr8:143574986|143575229 hsa-miR-6751-3p 0 1 0
chr8:143574986|143575229 hsa-miR-3619-5p 0 1 0
chr8:143574986|143575229 hsa-miR-4653-5p 0 1 0
chr8:143574986|143575229 hsa-miR-125b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143574986|143575229
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence LVLCRAPQPPVLRAESAQGQLGQGSRLCQGWERLTQLSLLEAEPQ
Nucleotide Sequence CTGGTACTGTGCAGGGCTCCGCAGCCGCCTGTGCTCAGGGCTGAGTCGGCTCAGGGACAGCTGGGCCAAGGCTCTAGACTCTGCCAGGGATGGGAGCGGCTCACACAGCTGTCCCTGCTGGAGGCAGAGCCGCAGTAG
CircID chr8:143574986|143575229
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MCSGLSRLRDSWAKALDSARDGSGSHSCPCWRQSRSSGS
Nucleotide Sequence CTGTGCTCAGGGCTGAGTCGGCTCAGGGACAGCTGGGCCAAGGCTCTAGACTCTGCCAGGGATGGGAGCGGCTCACACAGCTGTCCCTGCTGGAGGCAGAGCCGCAGTAGTGGCTCC
CircID chr8:143574986|143575229
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MRLCLQQGQLCEPLPSLAESRALAQLSLSRLSPEHRRLRSPAQYQ
Nucleotide Sequence CTGCGGCTCTGCCTCCAGCAGGGACAGCTGTGTGAGCCGCTCCCATCCCTGGCAGAGTCTAGAGCCTTGGCCCAGCTGTCCCTGAGCCGACTCAGCCCTGAGCACAGGCGGCTGCGGAGCCCTGCACAGTACCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab