CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143604896|143605032
Strand -
CircType exon
Host Gene ENSG00000104524.12;
Algorism CIRI2;
Sequence CTGGCCACTTGTCAGGAGCTTAGGATTGGGAGGAAAGAGGGAGCCTGTATCCAGACTAAAGCCAGGGGTCTGCATGTGTCCTGGCTGGCCAGGGCCACCCTCCCAGACCTCAAGCCACCCCACCTACCACTGCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143604896|143605032 hsa-miR-34a-5p 0 0 1
chr8:143604896|143605032 hsa-miR-34a-3p 0 0 1
chr8:143604896|143605032 hsa-miR-150-5p 0 0 1
chr8:143604896|143605032 hsa-miR-150-3p 0 0 1
chr8:143604896|143605032 hsa-miR-328-5p 0 0 1
chr8:143604896|143605032 hsa-miR-328-3p 0 0 1
chr8:143604896|143605032 hsa-miR-449a 0 0 1
chr8:143604896|143605032 hsa-miR-484 1 1 1
chr8:143604896|143605032 hsa-miR-608 1 1 1
chr8:143604896|143605032 hsa-miR-449b-5p 0 0 1
chr8:143604896|143605032 hsa-miR-449b-3p 0 0 1
chr8:143604896|143605032 hsa-miR-1238-5p 0 0 1
chr8:143604896|143605032 hsa-miR-1238-3p 0 0 1
chr8:143604896|143605032 hsa-miR-663b 1 1 1
chr8:143604896|143605032 hsa-miR-1291 0 1 1
chr8:143604896|143605032 hsa-miR-1197 0 1 1
chr8:143604896|143605032 hsa-miR-331-3p 0 0 1
chr8:143604896|143605032 hsa-miR-342-5p 0 0 1
chr8:143604896|143605032 hsa-miR-34c-5p 0 0 1
chr8:143604896|143605032 hsa-miR-642 0 0 1
chr8:143604896|143605032 hsa-miR-665 1 0 0
chr8:143604896|143605032 hsa-miR-3132 1 0 0
chr8:143604896|143605032 hsa-miR-4313 1 0 0
chr8:143604896|143605032 hsa-miR-4467 1 0 0
chr8:143604896|143605032 hsa-miR-3689c 0 1 0
chr8:143604896|143605032 hsa-miR-4507 1 0 0
chr8:143604896|143605032 hsa-miR-4515 1 0 0
chr8:143604896|143605032 hsa-miR-4651 1 1 0
chr8:143604896|143605032 hsa-miR-4754 1 0 0
chr8:143604896|143605032 hsa-miR-5100 1 0 0
chr8:143604896|143605032 hsa-miR-5572 1 0 0
chr8:143604896|143605032 hsa-miR-6745 1 0 0
chr8:143604896|143605032 hsa-miR-4435 0 1 0
chr8:143604896|143605032 hsa-miR-6749-3p 0 1 0
chr8:143604896|143605032 hsa-miR-3157-5p 0 1 0
chr8:143604896|143605032 hsa-miR-1273h-3p 1 0 0
chr8:143604896|143605032 hsa-miR-212-5p 0 1 0
chr8:143604896|143605032 hsa-miR-1233-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6881-3p 0 1 0
chr8:143604896|143605032 hsa-miR-6799-5p 1 0 0
chr8:143604896|143605032 hsa-miR-3192-5p 0 1 0
chr8:143604896|143605032 hsa-miR-6875-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6759-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6721-5p 1 0 0
chr8:143604896|143605032 hsa-miR-197-5p 1 0 0
chr8:143604896|143605032 hsa-miR-874-3p 1 0 0
chr8:143604896|143605032 hsa-miR-4728-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6742-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6748-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6796-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6732-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6782-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6850-5p 1 0 0
chr8:143604896|143605032 hsa-miR-4713-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6786-5p 1 0 0
chr8:143604896|143605032 hsa-miR-1229-5p 1 0 0
chr8:143604896|143605032 hsa-miR-885-3p 1 0 0
chr8:143604896|143605032 hsa-miR-1228-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6802-5p 1 1 0
chr8:143604896|143605032 hsa-miR-339-5p 1 0 0
chr8:143604896|143605032 hsa-miR-3190-5p 0 1 0
chr8:143604896|143605032 hsa-miR-7160-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6869-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6813-3p 1 0 0
chr8:143604896|143605032 hsa-miR-629-3p 0 1 0
chr8:143604896|143605032 hsa-miR-5000-3p 0 1 0
chr8:143604896|143605032 hsa-miR-6880-3p 1 0 0
chr8:143604896|143605032 hsa-miR-3124-3p 0 1 0
chr8:143604896|143605032 hsa-miR-6846-3p 1 0 0
chr8:143604896|143605032 hsa-miR-7158-5p 1 0 0
chr8:143604896|143605032 hsa-miR-10400-5p 1 0 0
chr8:143604896|143605032 hsa-miR-1233-5p 1 0 0
chr8:143604896|143605032 hsa-miR-3689b-3p 0 1 0
chr8:143604896|143605032 hsa-miR-4763-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6769b-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6787-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6812-5p 0 1 0
chr8:143604896|143605032 hsa-miR-6737-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6756-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6769a-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6819-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6842-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6851-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6722-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6763-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6779-5p 1 1 0
chr8:143604896|143605032 hsa-miR-6780a-5p 0 1 0
chr8:143604896|143605032 hsa-miR-6879-5p 0 1 0
chr8:143604896|143605032 hsa-miR-4685-3p 1 0 0
chr8:143604896|143605032 hsa-miR-6836-5p 1 0 0
chr8:143604896|143605032 hsa-miR-449c-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6848-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6883-5p 0 1 0
chr8:143604896|143605032 hsa-miR-3940-5p 1 0 0
chr8:143604896|143605032 hsa-miR-10398-5p 0 1 0
chr8:143604896|143605032 hsa-miR-6791-5p 1 0 0
chr8:143604896|143605032 hsa-miR-6810-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143604896|143605032
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence LATCQELRIGRKEGACIQTKARGLHVSWLARATLPDLKPPHLPLP
Nucleotide Sequence CTGGCCACTTGTCAGGAGCTTAGGATTGGGAGGAAAGAGGGAGCCTGTATCCAGACTAAAGCCAGGGGTCTGCATGTGTCCTGGCTGGCCAGGGCCACCCTCCCAGACCTCAAGCCACCCCACCTACCACTGCCC
CircID chr8:143604896|143605032
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MGGKREPVSRLKPGVCMCPGWPGPPSQTSSHPTYHCP
Nucleotide Sequence TTGGGAGGAAAGAGGGAGCCTGTATCCAGACTAAAGCCAGGGGTCTGCATGTGTCCTGGCTGGCCAGGGCCACCCTCCCAGACCTCAAGCCACCCCACCTACCACTGCCCA
CircID chr8:143604896|143605032
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MRSGRVALASQDTCRPLALVWIQAPSFLPILSS
Nucleotide Sequence TTGAGGTCTGGGAGGGTGGCCCTGGCCAGCCAGGACACATGCAGACCCCTGGCTTTAGTCTGGATACAGGCTCCCTCTTTCCTCCCAATCCTAAGCTCCTGA
CircID chr8:143604896|143605032
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MQTPGFSLDTGSLFPPNPKLLTSGQ
Nucleotide Sequence ATGCAGACCCCTGGCTTTAGTCTGGATACAGGCTCCCTCTTTCCTCCCAATCCTAAGCTCCTGACAAGTGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab