CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143605116|143605260
Strand -
CircType exon
Host Gene ENSG00000104524.12;
Algorism CIRI2;
Sequence CCTCTTCTCCAGGCTGCAGGGCAGGCTCCAGCTCCCCATGGGGGCCCCATCAGGCCAGGGCCCCTGGCTTTACTGCAGGGGAGAGGGTCTCTTGTGCAGACCCCATATGGCTCGTGCCCCCTAGAGCTGAGATGAGGCAGCCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143605116|143605260 hsa-miR-596 1 1 1
chr8:143605116|143605260 hsa-miR-874-5p 0 0 1
chr8:143605116|143605260 hsa-miR-874-3p 0 0 1
chr8:143605116|143605260 hsa-miR-920 0 0 1
chr8:143605116|143605260 hsa-miR-939-5p 0 0 1
chr8:143605116|143605260 hsa-miR-939-3p 0 0 1
chr8:143605116|143605260 hsa-miR-1291 0 1 1
chr8:143605116|143605260 hsa-miR-1253 0 0 1
chr8:143605116|143605260 hsa-miR-296-5p 0 0 1
chr8:143605116|143605260 hsa-miR-615-5p 1 0 1
chr8:143605116|143605260 hsa-miR-146b-3p 0 0 1
chr8:143605116|143605260 hsa-miR-1184 0 0 1
chr8:143605116|143605260 hsa-miR-331-3p 0 0 1
chr8:143605116|143605260 hsa-miR-1254 0 0 1
chr8:143605116|143605260 hsa-miR-1201 0 0 1
chr8:143605116|143605260 hsa-miR-346 1 1 0
chr8:143605116|143605260 hsa-miR-637 1 0 0
chr8:143605116|143605260 hsa-miR-661 0 1 0
chr8:143605116|143605260 hsa-miR-762 1 0 0
chr8:143605116|143605260 hsa-miR-3137 0 1 0
chr8:143605116|143605260 hsa-miR-4300 0 1 0
chr8:143605116|143605260 hsa-miR-3135b 0 1 0
chr8:143605116|143605260 hsa-miR-4527 0 1 0
chr8:143605116|143605260 hsa-miR-4741 1 0 0
chr8:143605116|143605260 hsa-miR-5691 0 1 0
chr8:143605116|143605260 hsa-miR-12119 1 0 0
chr8:143605116|143605260 hsa-miR-17-3p 0 1 0
chr8:143605116|143605260 hsa-miR-512-5p 0 1 0
chr8:143605116|143605260 hsa-miR-6892-3p 0 1 0
chr8:143605116|143605260 hsa-miR-6762-3p 1 0 0
chr8:143605116|143605260 hsa-miR-1288-3p 1 0 0
chr8:143605116|143605260 hsa-miR-6805-5p 0 1 0
chr8:143605116|143605260 hsa-miR-6827-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6882-3p 1 1 0
chr8:143605116|143605260 hsa-miR-7109-5p 1 0 0
chr8:143605116|143605260 hsa-miR-4763-5p 0 1 0
chr8:143605116|143605260 hsa-miR-4707-3p 1 0 0
chr8:143605116|143605260 hsa-miR-4786-3p 1 1 0
chr8:143605116|143605260 hsa-miR-6824-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6789-5p 1 0 0
chr8:143605116|143605260 hsa-miR-7156-3p 0 1 0
chr8:143605116|143605260 hsa-miR-1225-5p 1 0 0
chr8:143605116|143605260 hsa-miR-3675-5p 0 1 0
chr8:143605116|143605260 hsa-miR-1343-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6726-5p 1 1 0
chr8:143605116|143605260 hsa-miR-6756-5p 1 0 0
chr8:143605116|143605260 hsa-miR-7107-5p 0 1 0
chr8:143605116|143605260 hsa-miR-1237-5p 1 0 0
chr8:143605116|143605260 hsa-miR-328-5p 1 1 0
chr8:143605116|143605260 hsa-miR-6846-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6848-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6885-5p 1 0 0
chr8:143605116|143605260 hsa-miR-4665-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6762-5p 1 0 0
chr8:143605116|143605260 hsa-miR-6775-3p 0 1 0
chr8:143605116|143605260 hsa-miR-6503-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143605116|143605260
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MQGRLQLPMGAPSGQGPWLYCRGEGLLCRPHMARAP
Nucleotide Sequence CTGCAGGGCAGGCTCCAGCTCCCCATGGGGGCCCCATCAGGCCAGGGCCCCTGGCTTTACTGCAGGGGAGAGGGTCTCTTGTGCAGACCCCATATGGCTCGTGCCCCCTAG
CircID chr8:143605116|143605260
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MPHLSSRGHEPYGVCTRDPLPCSKARGPGLMGPPWGAGACPAAWRR
Nucleotide Sequence CTGCCTCATCTCAGCTCTAGGGGGCACGAGCCATATGGGGTCTGCACAAGAGACCCTCTCCCCTGCAGTAAAGCCAGGGGCCCTGGCCTGATGGGGCCCCCATGGGGAGCTGGAGCCTGCCCTGCAGCCTGGAGAAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab