CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143745886|143746038
Strand +
CircType exon
Host Gene ENSG00000203499.9;
Algorism CIRI2;
Sequence GGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTCAATACTAGCCTGGGCAACATAGTGAGACCCCATCTCTACAAAATAAAAAAATAGCCGGGGCATGGTGCTGTGTGCCTATAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143745886|143746038 hsa-miR-17-5p 0 0 1
chr8:143745886|143746038 hsa-miR-17-3p 0 0 1
chr8:143745886|143746038 hsa-miR-20a-5p 0 0 1
chr8:143745886|143746038 hsa-miR-20a-3p 0 0 1
chr8:143745886|143746038 hsa-miR-29a-5p 0 0 1
chr8:143745886|143746038 hsa-miR-29a-3p 0 0 1
chr8:143745886|143746038 hsa-miR-93-5p 0 0 1
chr8:143745886|143746038 hsa-miR-93-3p 0 0 1
chr8:143745886|143746038 hsa-miR-106a-5p 0 0 1
chr8:143745886|143746038 hsa-miR-106a-3p 0 0 1
chr8:143745886|143746038 hsa-miR-150-5p 0 0 1
chr8:143745886|143746038 hsa-miR-150-3p 0 0 1
chr8:143745886|143746038 hsa-miR-106b-5p 0 0 1
chr8:143745886|143746038 hsa-miR-106b-3p 0 0 1
chr8:143745886|143746038 hsa-miR-29c-5p 0 0 1
chr8:143745886|143746038 hsa-miR-29c-3p 0 0 1
chr8:143745886|143746038 hsa-miR-302a-5p 0 0 1
chr8:143745886|143746038 hsa-miR-302a-3p 0 0 1
chr8:143745886|143746038 hsa-miR-302b-5p 0 0 1
chr8:143745886|143746038 hsa-miR-302b-3p 0 0 1
chr8:143745886|143746038 hsa-miR-302c-5p 0 0 1
chr8:143745886|143746038 hsa-miR-302c-3p 0 0 1
chr8:143745886|143746038 hsa-miR-302d-5p 0 0 1
chr8:143745886|143746038 hsa-miR-302d-3p 0 0 1
chr8:143745886|143746038 hsa-miR-372-5p 0 0 1
chr8:143745886|143746038 hsa-miR-372-3p 0 0 1
chr8:143745886|143746038 hsa-miR-373-5p 0 0 1
chr8:143745886|143746038 hsa-miR-373-3p 0 0 1
chr8:143745886|143746038 hsa-miR-20b-5p 0 0 1
chr8:143745886|143746038 hsa-miR-20b-3p 0 0 1
chr8:143745886|143746038 hsa-miR-520e-5p 0 0 1
chr8:143745886|143746038 hsa-miR-520e-3p 0 0 1
chr8:143745886|143746038 hsa-miR-520b-5p 0 0 1
chr8:143745886|143746038 hsa-miR-520b-3p 0 0 1
chr8:143745886|143746038 hsa-miR-519d-5p 0 0 1
chr8:143745886|143746038 hsa-miR-519d-3p 0 0 1
chr8:143745886|143746038 hsa-miR-520g-5p 0 0 1
chr8:143745886|143746038 hsa-miR-520g-3p 0 0 1
chr8:143745886|143746038 hsa-miR-520h 0 0 1
chr8:143745886|143746038 hsa-miR-1234-3p 0 0 1
chr8:143745886|143746038 hsa-miR-302e 9 0 1
chr8:143745886|143746038 hsa-miR-1234 0 0 1
chr8:143745886|143746038 hsa-miR-512-3p 3 0 1
chr8:143745886|143746038 hsa-miR-532-3p -3 0 1
chr8:143745886|143746038 hsa-miR-615-5p -4 0 1
chr8:143745886|143746038 hsa-miR-767-5p -8 0 1
chr8:143745886|143746038 hsa-miR-1224-3p -6 1 1
chr8:143745886|143746038 hsa-miR-520d-3p 4 0 1
chr8:143745886|143746038 hsa-miR-520a-3p 7 0 1
chr8:143745886|143746038 hsa-miR-520c-3p 2 1 1
chr8:143745886|143746038 hsa-miR-1260 0 0 1
chr8:143745886|143746038 hsa-miR-1280 0 0 1
chr8:143745886|143746038 hsa-miR-29b 0 0 1
chr8:143745886|143746038 hsa-miR-1303 0 1 0
chr8:143745886|143746038 hsa-miR-1260a -9 1 0
chr8:143745886|143746038 hsa-miR-1260b -4 1 0
chr8:143745886|143746038 hsa-miR-4452 -20 1 0
chr8:143745886|143746038 hsa-miR-4484 0 1 0
chr8:143745886|143746038 hsa-miR-6749-3p -6 1 0
chr8:143745886|143746038 hsa-miR-3065-3p -5 1 0
chr8:143745886|143746038 hsa-miR-1285-5p -16 1 0
chr8:143745886|143746038 hsa-miR-1229-3p -6 1 0
chr8:143745886|143746038 hsa-miR-619-5p -17 1 0
chr8:143745886|143746038 hsa-miR-3922-3p -4 1 0
chr8:143745886|143746038 hsa-miR-526b-3p -1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143745886|143746038
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLPRLVLNSWPQAILPPRPPKVLGLKA
Nucleotide Sequence ATGTTGCCCAGGCTAGTATTGAACTCCTGGCCTCAAGCAATCCTCCCACCTCGGCCTCCCAAAGTGCTGGGATTAAAGGCGTGA
CircID chr8:143745886|143746038
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MPRLFFYFVEMGSHYVAQASIELLASSNPPTSASQSAGIKGVSH
Nucleotide Sequence ATGCCCCGGCTATTTTTTTATTTTGTAGAGATGGGGTCTCACTATGTTGCCCAGGCTAGTATTGAACTCCTGGCCTCAAGCAATCCTCCCACCTCGGCCTCCCAAAGTGCTGGGATTAAAGGCGTGAGCCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab