CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143817434|143817726
Strand +
CircType exon
Host Gene ENSG00000179950.12;
Algorism CIRI2;
Sequence CTGGGTGGCCAGTACTTGCGGGTGGGCAAGGCTGTCACACCGCCCATGCCCCTACTCACACCAGCCACGCCTGGAGGCCTCCCACCTGCCGCTGCTGTGGCAGCTGCTGCAGCCACTGCCAAGATCACAGCTCAGGTGAGGGCCCACACAGCTGTCGGCTTGAGGGTGGGCGGGCTGGCCCCTGATTCCTTGGAGACTGATTCAAGGTGGTCTTGAGTAGCCAGACCAGGGACTGAGCACGGTGACCTTTTGGGTTGCAGGAAGCAGTGGCCGGAGCAGCGGTGCTGGGTACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143817434|143817726 hsa-miR-22-5p 0 0 1
chr8:143817434|143817726 hsa-miR-22-3p 0 0 1
chr8:143817434|143817726 hsa-miR-107 0 0 1
chr8:143817434|143817726 hsa-miR-34a-5p 0 0 1
chr8:143817434|143817726 hsa-miR-34a-3p 0 0 1
chr8:143817434|143817726 hsa-miR-149-5p 0 0 1
chr8:143817434|143817726 hsa-miR-149-3p 0 0 1
chr8:143817434|143817726 hsa-miR-449a 0 1 1
chr8:143817434|143817726 hsa-miR-193b-5p 0 0 1
chr8:143817434|143817726 hsa-miR-193b-3p 0 0 1
chr8:143817434|143817726 hsa-miR-503-5p 0 0 1
chr8:143817434|143817726 hsa-miR-503-3p 0 0 1
chr8:143817434|143817726 hsa-miR-558 0 0 1
chr8:143817434|143817726 hsa-miR-588 0 0 1
chr8:143817434|143817726 hsa-miR-604 0 0 1
chr8:143817434|143817726 hsa-miR-622 0 0 1
chr8:143817434|143817726 hsa-miR-646 0 1 1
chr8:143817434|143817726 hsa-miR-647 0 1 1
chr8:143817434|143817726 hsa-miR-449b-5p 0 0 1
chr8:143817434|143817726 hsa-miR-449b-3p 0 0 1
chr8:143817434|143817726 hsa-miR-888-5p 0 0 1
chr8:143817434|143817726 hsa-miR-888-3p 0 0 1
chr8:143817434|143817726 hsa-miR-892b 0 0 1
chr8:143817434|143817726 hsa-miR-1278 0 0 1
chr8:143817434|143817726 hsa-miR-296-5p 0 0 1
chr8:143817434|143817726 hsa-miR-1184 0 1 1
chr8:143817434|143817726 hsa-miR-455-3p 0 0 1
chr8:143817434|143817726 hsa-miR-34c-5p 0 0 1
chr8:143817434|143817726 hsa-miR-193a-3p 0 0 1
chr8:143817434|143817726 hsa-miR-515-5p 0 0 1
chr8:143817434|143817726 hsa-miR-542-3p 0 0 1
chr8:143817434|143817726 hsa-miR-516a-3p 0 0 1
chr8:143817434|143817726 hsa-miR-103 0 0 1
chr8:143817434|143817726 hsa-miR-644 0 0 1
chr8:143817434|143817726 hsa-miR-138 0 0 1
chr8:143817434|143817726 hsa-miR-147 0 0 1
chr8:143817434|143817726 hsa-miR-608 1 0 0
chr8:143817434|143817726 hsa-miR-940 1 0 0
chr8:143817434|143817726 hsa-miR-1268a 1 1 0
chr8:143817434|143817726 hsa-miR-2861 1 0 0
chr8:143817434|143817726 hsa-miR-4322 0 1 0
chr8:143817434|143817726 hsa-miR-4265 0 1 0
chr8:143817434|143817726 hsa-miR-4264 0 1 0
chr8:143817434|143817726 hsa-miR-3665 0 1 0
chr8:143817434|143817726 hsa-miR-3937 1 0 0
chr8:143817434|143817726 hsa-miR-1268b 1 1 0
chr8:143817434|143817726 hsa-miR-4449 1 0 0
chr8:143817434|143817726 hsa-miR-4507 1 0 0
chr8:143817434|143817726 hsa-miR-3960 1 0 0
chr8:143817434|143817726 hsa-miR-3974 0 1 0
chr8:143817434|143817726 hsa-miR-4651 1 0 0
chr8:143817434|143817726 hsa-miR-4721 1 0 0
chr8:143817434|143817726 hsa-miR-4794 0 1 0
chr8:143817434|143817726 hsa-miR-6860 1 0 0
chr8:143817434|143817726 hsa-miR-7974 0 1 0
chr8:143817434|143817726 hsa-miR-7978 1 0 0
chr8:143817434|143817726 hsa-miR-138-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4433a-3p 1 0 0
chr8:143817434|143817726 hsa-miR-6861-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4687-3p 1 0 0
chr8:143817434|143817726 hsa-miR-6799-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6089 1 0 0
chr8:143817434|143817726 hsa-miR-6762-3p 1 0 0
chr8:143817434|143817726 hsa-miR-6727-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4474-3p 1 0 0
chr8:143817434|143817726 hsa-miR-3622b-5p 0 1 0
chr8:143817434|143817726 hsa-miR-6759-5p 1 0 0
chr8:143817434|143817726 hsa-miR-197-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6849-3p 0 1 0
chr8:143817434|143817726 hsa-miR-1915-5p 0 1 0
chr8:143817434|143817726 hsa-miR-3663-5p 0 1 0
chr8:143817434|143817726 hsa-miR-423-3p 1 0 0
chr8:143817434|143817726 hsa-miR-5008-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6858-3p 1 1 0
chr8:143817434|143817726 hsa-miR-4763-5p 1 1 0
chr8:143817434|143817726 hsa-miR-7108-3p 0 1 0
chr8:143817434|143817726 hsa-miR-4707-3p 1 0 0
chr8:143817434|143817726 hsa-miR-1229-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4640-5p 1 0 0
chr8:143817434|143817726 hsa-miR-1228-5p 0 1 0
chr8:143817434|143817726 hsa-miR-6749-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4787-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6830-5p 0 1 0
chr8:143817434|143817726 hsa-miR-6789-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6802-5p 0 1 0
chr8:143817434|143817726 hsa-miR-7160-3p 1 0 0
chr8:143817434|143817726 hsa-miR-6869-5p 1 1 0
chr8:143817434|143817726 hsa-miR-1225-5p 1 0 0
chr8:143817434|143817726 hsa-miR-1307-3p 1 0 0
chr8:143817434|143817726 hsa-miR-7158-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4714-3p 0 1 0
chr8:143817434|143817726 hsa-miR-1233-5p 1 1 0
chr8:143817434|143817726 hsa-miR-1273h-5p 0 1 0
chr8:143817434|143817726 hsa-miR-4763-3p 1 0 0
chr8:143817434|143817726 hsa-miR-6778-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6812-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6775-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6743-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6756-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6769a-5p 1 0 0
chr8:143817434|143817726 hsa-miR-10401-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6779-5p 1 1 0
chr8:143817434|143817726 hsa-miR-5196-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6862-5p 0 1 0
chr8:143817434|143817726 hsa-miR-1909-3p 1 1 0
chr8:143817434|143817726 hsa-miR-328-5p 1 0 0
chr8:143817434|143817726 hsa-miR-3689a-3p 0 1 0
chr8:143817434|143817726 hsa-miR-449c-5p 1 1 0
chr8:143817434|143817726 hsa-miR-4745-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6729-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6858-5p 1 0 0
chr8:143817434|143817726 hsa-miR-1238-5p 1 0 0
chr8:143817434|143817726 hsa-miR-4758-5p 1 0 0
chr8:143817434|143817726 hsa-miR-3940-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6790-5p 1 0 0
chr8:143817434|143817726 hsa-miR-6724-5p 1 1 0
chr8:143817434|143817726 hsa-miR-6862-3p 1 0 0
chr8:143817434|143817726 hsa-miR-3085-3p 1 1 0
chr8:143817434|143817726 hsa-miR-3622b-3p 0 1 0
chr8:143817434|143817726 hsa-miR-6824-3p 0 1 0
chr8:143817434|143817726 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143817434|143817726
ORF Type ORF1
Protein Length 71
Nucleotide Length 216
Protein Sequence LGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQVRAHTAVGLRVGGLAPDSLETDSRWS
Nucleotide Sequence CTGGGTGGCCAGTACTTGCGGGTGGGCAAGGCTGTCACACCGCCCATGCCCCTACTCACACCAGCCACGCCTGGAGGCCTCCCACCTGCCGCTGCTGTGGCAGCTGCTGCAGCCACTGCCAAGATCACAGCTCAGGTGAGGGCCCACACAGCTGTCGGCTTGAGGGTGGGCGGGCTGGCCCCTGATTCCTTGGAGACTGATTCAAGGTGGTCTTGA
CircID chr8:143817434|143817726
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MSHRPCPYSHQPRLEASHLPLLWQLLQPLPRSQLR
Nucleotide Sequence CTGTCACACCGCCCATGCCCCTACTCACACCAGCCACGCCTGGAGGCCTCCCACCTGCCGCTGCTGTGGCAGCTGCTGCAGCCACTGCCAAGATCACAGCTCAGGTGA
CircID chr8:143817434|143817726
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MQPKRSPCSVPGLATQDHLESVSKESGASPPTLKPTAVWALT
Nucleotide Sequence CTGCAACCCAAAAGGTCACCGTGCTCAGTCCCTGGTCTGGCTACTCAAGACCACCTTGAATCAGTCTCCAAGGAATCAGGGGCCAGCCCGCCCACCCTCAAGCCGACAGCTGTGTGGGCCCTCACCTGA
CircID chr8:143817434|143817726
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MAVAAAAATAAAGGRPPGVAGVSRGMGGVTALPTRKYWPP
Nucleotide Sequence TTGGCAGTGGCTGCAGCAGCTGCCACAGCAGCGGCAGGTGGGAGGCCTCCAGGCGTGGCTGGTGTGAGTAGGGGCATGGGCGGTGTGACAGCCTTGCCCACCCGCAAGTACTGGCCACCC
CircID chr8:143817434|143817726
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MVWLLKTTLNQSPRNQGPARPPSSRQLCGPSPEL
Nucleotide Sequence CTGGTCTGGCTACTCAAGACCACCTTGAATCAGTCTCCAAGGAATCAGGGGCCAGCCCGCCCACCCTCAAGCCGACAGCTGTGTGGGCCCTCACCTGAGCTGTGA
CircID chr8:143817434|143817726
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MLRPLLPATQKVTVLSPWSGYSRPP
Nucleotide Sequence CTGCTCCGGCCACTGCTTCCTGCAACCCAAAAGGTCACCGTGCTCAGTCCCTGGTCTGGCTACTCAAGACCACCTTGA
CircID chr8:143817434|143817726
ORF Type ORF7
Protein Length 27
Nucleotide Length 84
Protein Sequence MSCDLGSGCSSCHSSGRWEASRRGWCE
Nucleotide Sequence CTGAGCTGTGATCTTGGCAGTGGCTGCAGCAGCTGCCACAGCAGCGGCAGGTGGGAGGCCTCCAGGCGTGGCTGGTGTGAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab