CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143818220|143818441
Strand -
CircType exon
Host Gene ENSG00000179950.12;
Algorism CIRI2;
Sequence CGAGTTCATCTGCTCCAAGGCCAGCTGTGCAGCTTCGGGGACCTCATACTCCACGAAGGCAAAGCCCTAGACACAGGGACACACCTGTCAGGCTGCGCGAGCCCAGGGGTGGGGGCGAGCCCGAAGTGGCCGGGGCGGACCAAGCCTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143818220|143818441 hsa-miR-214-5p 0 0 1
chr8:143818220|143818441 hsa-miR-214-3p 0 0 1
chr8:143818220|143818441 hsa-miR-328-5p 0 0 1
chr8:143818220|143818441 hsa-miR-328-3p 0 0 1
chr8:143818220|143818441 hsa-miR-335-5p 0 0 1
chr8:143818220|143818441 hsa-miR-335-3p 0 0 1
chr8:143818220|143818441 hsa-miR-133b 0 0 1
chr8:143818220|143818441 hsa-miR-432-5p 0 0 1
chr8:143818220|143818441 hsa-miR-432-3p 0 0 1
chr8:143818220|143818441 hsa-miR-552-5p 0 0 1
chr8:143818220|143818441 hsa-miR-552-3p 0 0 1
chr8:143818220|143818441 hsa-miR-624-5p 0 0 1
chr8:143818220|143818441 hsa-miR-624-3p 0 0 1
chr8:143818220|143818441 hsa-miR-922 0 0 1
chr8:143818220|143818441 hsa-miR-339-5p 0 0 1
chr8:143818220|143818441 hsa-miR-1207-3p 0 0 1
chr8:143818220|143818441 hsa-miR-331-3p 0 0 1
chr8:143818220|143818441 hsa-miR-1274a 0 0 1
chr8:143818220|143818441 hsa-miR-1274b 0 0 1
chr8:143818220|143818441 hsa-miR-133a 0 0 1
chr8:143818220|143818441 hsa-miR-346 1 0 0
chr8:143818220|143818441 hsa-miR-638 1 0 0
chr8:143818220|143818441 hsa-miR-1181 1 0 0
chr8:143818220|143818441 hsa-miR-1913 1 0 0
chr8:143818220|143818441 hsa-miR-718 1 0 0
chr8:143818220|143818441 hsa-miR-378c 1 0 0
chr8:143818220|143818441 hsa-miR-4313 1 0 0
chr8:143818220|143818441 hsa-miR-3661 1 0 0
chr8:143818220|143818441 hsa-miR-378g 1 0 0
chr8:143818220|143818441 hsa-miR-4440 1 0 0
chr8:143818220|143818441 hsa-miR-4449 1 0 0
chr8:143818220|143818441 hsa-miR-4453 1 0 0
chr8:143818220|143818441 hsa-miR-4487 1 0 0
chr8:143818220|143818441 hsa-miR-4498 1 0 0
chr8:143818220|143818441 hsa-miR-4505 1 0 0
chr8:143818220|143818441 hsa-miR-4674 1 0 0
chr8:143818220|143818441 hsa-miR-8060 1 0 0
chr8:143818220|143818441 hsa-miR-6836-3p 1 0 0
chr8:143818220|143818441 hsa-miR-7114-5p 1 0 0
chr8:143818220|143818441 hsa-miR-3189-5p 1 0 0
chr8:143818220|143818441 hsa-miR-6742-5p 1 0 0
chr8:143818220|143818441 hsa-miR-532-3p 1 0 0
chr8:143818220|143818441 hsa-miR-6763-3p 1 0 0
chr8:143818220|143818441 hsa-miR-1247-5p 1 0 0
chr8:143818220|143818441 hsa-miR-4707-3p 1 0 0
chr8:143818220|143818441 hsa-miR-3944-3p 1 0 0
chr8:143818220|143818441 hsa-miR-1908-3p 1 0 0
chr8:143818220|143818441 hsa-miR-4783-5p 1 0 0
chr8:143818220|143818441 hsa-miR-4707-5p 1 0 0
chr8:143818220|143818441 hsa-miR-5189-5p 1 0 0
chr8:143818220|143818441 hsa-miR-4685-5p 1 0 0
chr8:143818220|143818441 hsa-miR-3187-5p 1 0 0
chr8:143818220|143818441 hsa-miR-10396a-3p 1 0 0
chr8:143818220|143818441 hsa-miR-10396b-3p 1 0 0
chr8:143818220|143818441 hsa-miR-6805-3p 1 0 0
chr8:143818220|143818441 hsa-miR-10392-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143818220|143818441
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MLQGQLCSFGDLILHEGKALDTGTHLSGCASPGVGASPKWPGRTKPADLVLHGDGVPGHVDALDGAKGGKG
Nucleotide Sequence CTGCTCCAAGGCCAGCTGTGCAGCTTCGGGGACCTCATACTCCACGAAGGCAAAGCCCTAGACACAGGGACACACCTGTCAGGCTGCGCGAGCCCAGGGGTGGGGGCGAGCCCGAAGTGGCCGGGGCGGACCAAGCCTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAGGC
CircID chr8:143818220|143818441
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MLTLCFMVTESQDMSMLLMGPKGAK
Nucleotide Sequence CTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAG
CircID chr8:143818220|143818441
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MSWDSVTMKHKVSRLGPPRPLRARPHPWARAA
Nucleotide Sequence ATGTCCTGGGACTCCGTCACCATGAAGCACAAGGTCAGCAGGCTTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGA
CircID chr8:143818220|143818441
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MVRPGHFGLAPTPGLAQPDRCVPVSRALPSWSMRSPKLHSWPWSR
Nucleotide Sequence TTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGACAGGTGTGTCCCTGTGTCTAGGGCTTTGCCTTCGTGGAGTATGAGGTCCCCGAAGCTGCACAGCTGGCCTTGGAGCAGATGA
CircID chr8:143818220|143818441
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MGLRHHEAQGQQAWSAPATSGSPPPLGSRSLTGVSLCLGLCLRGV
Nucleotide Sequence CTGGGACTCCGTCACCATGAAGCACAAGGTCAGCAGGCTTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGACAGGTGTGTCCCTGTGTCTAGGGCTTTGCCTTCGTGGAGTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab