CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143818220|143818465
Strand -
CircType exon
Host Gene ENSG00000179950.12;
Algorism CIRI2;
Sequence CGAGTTCATCTGCTCCAAGGCCAGCTGTGCAGCTTCGGGGACCTCATACTCCACGAAGGCAAAGCCCTAGACACAGGGACACACCTGTCAGGCTGCGCGAGCCCAGGGGTGGGGGCGAGCCCGAAGTGGCCGGGGCGGACCAAGCCTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAGGCCTGGCGGATGGTGTCCTCCCCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143818220|143818465 hsa-miR-214-5p 0 0 1
chr8:143818220|143818465 hsa-miR-214-3p 0 0 1
chr8:143818220|143818465 hsa-miR-328-5p 0 0 1
chr8:143818220|143818465 hsa-miR-328-3p 0 0 1
chr8:143818220|143818465 hsa-miR-335-5p 0 0 1
chr8:143818220|143818465 hsa-miR-335-3p 0 0 1
chr8:143818220|143818465 hsa-miR-133b 0 1 1
chr8:143818220|143818465 hsa-miR-432-5p 0 0 1
chr8:143818220|143818465 hsa-miR-432-3p 0 0 1
chr8:143818220|143818465 hsa-miR-552-5p 0 0 1
chr8:143818220|143818465 hsa-miR-552-3p 0 0 1
chr8:143818220|143818465 hsa-miR-624-5p 0 0 1
chr8:143818220|143818465 hsa-miR-624-3p 0 0 1
chr8:143818220|143818465 hsa-miR-625-5p 0 0 1
chr8:143818220|143818465 hsa-miR-625-3p 0 0 1
chr8:143818220|143818465 hsa-miR-637 0 0 1
chr8:143818220|143818465 hsa-miR-922 0 0 1
chr8:143818220|143818465 hsa-miR-1275 0 0 1
chr8:143818220|143818465 hsa-miR-1197 0 0 1
chr8:143818220|143818465 hsa-miR-339-5p 0 0 1
chr8:143818220|143818465 hsa-miR-1207-3p 0 1 1
chr8:143818220|143818465 hsa-miR-331-3p 0 1 1
chr8:143818220|143818465 hsa-miR-1274a 0 0 1
chr8:143818220|143818465 hsa-miR-1274b 0 0 1
chr8:143818220|143818465 hsa-miR-133a 0 0 1
chr8:143818220|143818465 hsa-miR-346 1 0 0
chr8:143818220|143818465 hsa-miR-638 1 0 0
chr8:143818220|143818465 hsa-miR-661 0 1 0
chr8:143818220|143818465 hsa-miR-1181 1 0 0
chr8:143818220|143818465 hsa-miR-1913 1 0 0
chr8:143818220|143818465 hsa-miR-718 1 0 0
chr8:143818220|143818465 hsa-miR-3176 0 1 0
chr8:143818220|143818465 hsa-miR-378c 1 1 0
chr8:143818220|143818465 hsa-miR-4293 0 1 0
chr8:143818220|143818465 hsa-miR-4304 0 1 0
chr8:143818220|143818465 hsa-miR-4313 1 1 0
chr8:143818220|143818465 hsa-miR-3650 0 1 0
chr8:143818220|143818465 hsa-miR-3660 0 1 0
chr8:143818220|143818465 hsa-miR-378g 1 1 0
chr8:143818220|143818465 hsa-miR-4449 1 0 0
chr8:143818220|143818465 hsa-miR-4453 1 0 0
chr8:143818220|143818465 hsa-miR-4487 1 0 0
chr8:143818220|143818465 hsa-miR-4498 1 0 0
chr8:143818220|143818465 hsa-miR-4505 1 0 0
chr8:143818220|143818465 hsa-miR-4674 1 1 0
chr8:143818220|143818465 hsa-miR-5698 0 1 0
chr8:143818220|143818465 hsa-miR-6084 0 1 0
chr8:143818220|143818465 hsa-miR-8060 1 1 0
chr8:143818220|143818465 hsa-miR-6894-5p 1 0 0
chr8:143818220|143818465 hsa-miR-7114-5p 1 0 0
chr8:143818220|143818465 hsa-miR-593-5p 1 1 0
chr8:143818220|143818465 hsa-miR-3189-5p 1 1 0
chr8:143818220|143818465 hsa-miR-6742-5p 1 0 0
chr8:143818220|143818465 hsa-miR-532-3p 1 1 0
chr8:143818220|143818465 hsa-miR-1343-3p 0 1 0
chr8:143818220|143818465 hsa-miR-615-5p 0 1 0
chr8:143818220|143818465 hsa-miR-939-3p 0 1 0
chr8:143818220|143818465 hsa-miR-7109-5p 1 0 0
chr8:143818220|143818465 hsa-miR-6763-3p 1 0 0
chr8:143818220|143818465 hsa-miR-1247-5p 1 0 0
chr8:143818220|143818465 hsa-miR-4707-3p 1 0 0
chr8:143818220|143818465 hsa-miR-3944-3p 1 1 0
chr8:143818220|143818465 hsa-miR-1908-3p 1 0 0
chr8:143818220|143818465 hsa-miR-4690-5p 0 1 0
chr8:143818220|143818465 hsa-miR-4783-5p 1 0 0
chr8:143818220|143818465 hsa-miR-6824-5p 1 0 0
chr8:143818220|143818465 hsa-miR-4707-5p 1 1 0
chr8:143818220|143818465 hsa-miR-3158-3p 0 1 0
chr8:143818220|143818465 hsa-miR-133a-3p 0 1 0
chr8:143818220|143818465 hsa-miR-4650-5p 0 1 0
chr8:143818220|143818465 hsa-miR-6803-5p 1 0 0
chr8:143818220|143818465 hsa-miR-7111-5p 1 1 0
chr8:143818220|143818465 hsa-miR-5189-5p 1 0 0
chr8:143818220|143818465 hsa-miR-4685-5p 1 0 0
chr8:143818220|143818465 hsa-miR-3187-5p 1 0 0
chr8:143818220|143818465 hsa-miR-10396a-3p 1 1 0
chr8:143818220|143818465 hsa-miR-10396b-3p 1 1 0
chr8:143818220|143818465 hsa-miR-6791-5p 0 1 0
chr8:143818220|143818465 hsa-miR-6805-3p 1 0 0
chr8:143818220|143818465 hsa-miR-10400-3p 0 1 0
chr8:143818220|143818465 hsa-miR-10392-3p 1 0 0
chr8:143818220|143818465 hsa-miR-6783-3p 0 1 0
chr8:143818220|143818465 hsa-miR-3922-3p 0 1 0
chr8:143818220|143818465 hsa-miR-1245b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143818220|143818465
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MLQGQLCSFGDLILHEGKALDTGTHLSGCASPGVGASPKWPGRTKPADLVLHGDGVPGHVDALDGAKGGKGLADGVLPQ
Nucleotide Sequence CTGCTCCAAGGCCAGCTGTGCAGCTTCGGGGACCTCATACTCCACGAAGGCAAAGCCCTAGACACAGGGACACACCTGTCAGGCTGCGCGAGCCCAGGGGTGGGGGCGAGCCCGAAGTGGCCGGGGCGGACCAAGCCTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAGGCCTGGCGGATGGTGTCCTCCCCCAG
CircID chr8:143818220|143818465
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MLTLCFMVTESQDMSMLLMGPKGAKAWRMVSSP
Nucleotide Sequence CTGCTGACCTTGTGCTTCATGGTGACGGAGTCCCAGGACATGTCGATGCTCTTGATGGGGCCAAAGGGGGCAAAGGCCTGGCGGATGGTGTCCTCCCCC
CircID chr8:143818220|143818465
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKVSRLGPPRPLRARPHPWARAA
Nucleotide Sequence CTGGGGGAGGACACCATCCGCCAGGCCTTTGCCCCCTTTGGCCCCATCAAGAGCATCGACATGTCCTGGGACTCCGTCACCATGAAGCACAAGGTCAGCAGGCTTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGA
CircID chr8:143818220|143818465
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MVRPGHFGLAPTPGLAQPDRCVPVSRALPSWSMRSPKLHSWPWSR
Nucleotide Sequence TTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGACAGGTGTGTCCCTGTGTCTAGGGCTTTGCCTTCGTGGAGTATGAGGTCCCCGAAGCTGCACAGCTGGCCTTGGAGCAGATGA
CircID chr8:143818220|143818465
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MGLRHHEAQGQQAWSAPATSGSPPPLGSRSLTGVSLCLGLCLRGV
Nucleotide Sequence CTGGGACTCCGTCACCATGAAGCACAAGGTCAGCAGGCTTGGTCCGCCCCGGCCACTTCGGGCTCGCCCCCACCCCTGGGCTCGCGCAGCCTGACAGGTGTGTCCCTGTGTCTAGGGCTTTGCCTTCGTGGAGTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab