CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143915714|143915938
Strand +
CircType exon
Host Gene ENSG00000178209.13;
Algorism CIRI2;
Sequence CTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAGCCCGCCTGCCAGTCCTAGCTGCACAGGGCAGCTGGGCCCAACCCTGTCTGTAGAGGGCCCTGGTGTTTCTAGCACTGGCCTGCACGGTGGGCCTTGCTGGGGACGGGGGGCCCCAGTCAGCCTCTCTCCCAGTCTACCCAGAGAAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143915714|143915938 hsa-miR-22-5p 0 0 1
chr8:143915714|143915938 hsa-miR-22-3p 0 0 1
chr8:143915714|143915938 hsa-miR-10a-5p 0 0 1
chr8:143915714|143915938 hsa-miR-10a-3p 0 0 1
chr8:143915714|143915938 hsa-miR-10b-5p 0 0 1
chr8:143915714|143915938 hsa-miR-10b-3p 0 0 1
chr8:143915714|143915938 hsa-miR-185-5p 0 0 1
chr8:143915714|143915938 hsa-miR-185-3p 0 0 1
chr8:143915714|143915938 hsa-miR-379-5p 0 0 1
chr8:143915714|143915938 hsa-miR-379-3p 0 0 1
chr8:143915714|143915938 hsa-miR-326 1 0 1
chr8:143915714|143915938 hsa-miR-506-5p 0 0 1
chr8:143915714|143915938 hsa-miR-506-3p 0 0 1
chr8:143915714|143915938 hsa-miR-1301-5p 0 0 1
chr8:143915714|143915938 hsa-miR-1301-3p 0 0 1
chr8:143915714|143915938 hsa-miR-874-5p 0 0 1
chr8:143915714|143915938 hsa-miR-874-3p 0 0 1
chr8:143915714|143915938 hsa-miR-541-5p 0 0 1
chr8:143915714|143915938 hsa-miR-541-3p 0 0 1
chr8:143915714|143915938 hsa-miR-942-5p 0 0 1
chr8:143915714|143915938 hsa-miR-942-3p 0 0 1
chr8:143915714|143915938 hsa-miR-1247-5p 0 0 1
chr8:143915714|143915938 hsa-miR-1247-3p 0 0 1
chr8:143915714|143915938 hsa-miR-1324 0 0 1
chr8:143915714|143915938 hsa-miR-1825 0 0 1
chr8:143915714|143915938 hsa-miR-139-5p 0 0 1
chr8:143915714|143915938 hsa-miR-296-5p 0 1 1
chr8:143915714|143915938 hsa-miR-296-3p 1 1 1
chr8:143915714|143915938 hsa-miR-485-5p 0 1 1
chr8:143915714|143915938 hsa-miR-146b-3p 0 1 1
chr8:143915714|143915938 hsa-miR-654-5p 0 0 1
chr8:143915714|143915938 hsa-miR-1207-5p 1 0 1
chr8:143915714|143915938 hsa-miR-330-5p 1 0 1
chr8:143915714|143915938 hsa-miR-1302 0 0 1
chr8:143915714|143915938 hsa-miR-1280 0 0 1
chr8:143915714|143915938 hsa-miR-7 0 0 1
chr8:143915714|143915938 hsa-miR-124 0 0 1
chr8:143915714|143915938 hsa-miR-151-3p 0 0 1
chr8:143915714|143915938 hsa-miR-608 1 1 0
chr8:143915714|143915938 hsa-miR-612 1 0 0
chr8:143915714|143915938 hsa-miR-637 1 0 0
chr8:143915714|143915938 hsa-miR-762 1 1 0
chr8:143915714|143915938 hsa-miR-940 1 0 0
chr8:143915714|143915938 hsa-miR-1275 1 1 0
chr8:143915714|143915938 hsa-miR-2861 1 0 0
chr8:143915714|143915938 hsa-miR-3132 1 1 0
chr8:143915714|143915938 hsa-miR-3141 1 0 0
chr8:143915714|143915938 hsa-miR-4313 0 1 0
chr8:143915714|143915938 hsa-miR-3917 1 0 0
chr8:143915714|143915938 hsa-miR-3937 0 1 0
chr8:143915714|143915938 hsa-miR-4463 1 1 0
chr8:143915714|143915938 hsa-miR-4466 1 0 0
chr8:143915714|143915938 hsa-miR-4478 0 1 0
chr8:143915714|143915938 hsa-miR-4488 1 0 0
chr8:143915714|143915938 hsa-miR-4498 0 1 0
chr8:143915714|143915938 hsa-miR-4507 1 1 0
chr8:143915714|143915938 hsa-miR-4514 0 1 0
chr8:143915714|143915938 hsa-miR-4515 1 0 0
chr8:143915714|143915938 hsa-miR-1587 1 1 0
chr8:143915714|143915938 hsa-miR-4651 1 0 0
chr8:143915714|143915938 hsa-miR-4654 1 0 0
chr8:143915714|143915938 hsa-miR-4739 1 0 0
chr8:143915714|143915938 hsa-miR-4741 1 0 0
chr8:143915714|143915938 hsa-miR-5047 0 1 0
chr8:143915714|143915938 hsa-miR-5787 0 1 0
chr8:143915714|143915938 hsa-miR-6090 1 0 0
chr8:143915714|143915938 hsa-miR-8085 1 1 0
chr8:143915714|143915938 hsa-miR-8089 1 1 0
chr8:143915714|143915938 hsa-miR-18a-3p 0 1 0
chr8:143915714|143915938 hsa-miR-92a-1-5p 0 1 0
chr8:143915714|143915938 hsa-miR-4731-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6861-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6894-5p 1 0 0
chr8:143915714|143915938 hsa-miR-1972 1 0 0
chr8:143915714|143915938 hsa-miR-6799-5p 1 0 0
chr8:143915714|143915938 hsa-miR-8071 1 0 0
chr8:143915714|143915938 hsa-miR-7851-3p 1 0 0
chr8:143915714|143915938 hsa-miR-1227-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6089 1 0 0
chr8:143915714|143915938 hsa-miR-4722-5p 1 0 0
chr8:143915714|143915938 hsa-miR-3064-5p 0 1 0
chr8:143915714|143915938 hsa-miR-197-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6742-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6798-5p 1 0 0
chr8:143915714|143915938 hsa-miR-4793-3p 1 0 0
chr8:143915714|143915938 hsa-miR-6765-3p 0 1 0
chr8:143915714|143915938 hsa-miR-5008-5p 1 0 0
chr8:143915714|143915938 hsa-miR-615-5p 0 1 0
chr8:143915714|143915938 hsa-miR-204-3p 0 1 0
chr8:143915714|143915938 hsa-miR-1229-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6753-5p 0 1 0
chr8:143915714|143915938 hsa-miR-30c-2-3p 0 1 0
chr8:143915714|143915938 hsa-miR-4690-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6823-5p 0 1 0
chr8:143915714|143915938 hsa-miR-339-5p 0 1 0
chr8:143915714|143915938 hsa-miR-7112-5p 1 0 0
chr8:143915714|143915938 hsa-miR-7160-3p 0 1 0
chr8:143915714|143915938 hsa-miR-1225-5p 1 0 0
chr8:143915714|143915938 hsa-miR-3619-3p 1 0 0
chr8:143915714|143915938 hsa-miR-6818-5p 0 1 0
chr8:143915714|143915938 hsa-miR-1296-5p 1 0 0
chr8:143915714|143915938 hsa-miR-328-3p 1 0 0
chr8:143915714|143915938 hsa-miR-875-3p 0 1 0
chr8:143915714|143915938 hsa-miR-124-3p 0 1 0
chr8:143915714|143915938 hsa-miR-4763-3p 1 0 0
chr8:143915714|143915938 hsa-miR-6778-5p 1 0 0
chr8:143915714|143915938 hsa-miR-5001-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6756-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6803-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6851-5p 1 0 0
chr8:143915714|143915938 hsa-miR-1249-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6751-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6779-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6780a-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6788-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6797-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6808-5p 0 1 0
chr8:143915714|143915938 hsa-miR-3620-5p 1 1 0
chr8:143915714|143915938 hsa-miR-5196-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6836-5p 1 1 0
chr8:143915714|143915938 hsa-miR-4685-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6795-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6848-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6887-5p 1 0 0
chr8:143915714|143915938 hsa-miR-6831-5p 0 1 0
chr8:143915714|143915938 hsa-miR-3940-5p 1 1 0
chr8:143915714|143915938 hsa-miR-30c-1-3p 0 1 0
chr8:143915714|143915938 hsa-miR-6731-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6856-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6773-5p 0 1 0
chr8:143915714|143915938 hsa-miR-7151-3p 1 1 0
chr8:143915714|143915938 hsa-miR-4646-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6724-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6791-5p 1 1 0
chr8:143915714|143915938 hsa-miR-769-3p 1 1 0
chr8:143915714|143915938 hsa-miR-3529-5p 1 1 0
chr8:143915714|143915938 hsa-miR-6837-5p 1 0 0
chr8:143915714|143915938 hsa-miR-4723-3p 1 0 0
chr8:143915714|143915938 hsa-miR-6504-5p 0 1 0
chr8:143915714|143915938 hsa-miR-6811-5p 1 1 0
chr8:143915714|143915938 hsa-miR-519a-2-5p 0 1 0
chr8:143915714|143915938 hsa-miR-520b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143915714|143915938
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence LPLTQPGALEGPKLGPSPPSCLPRVARLPVLAAQGSWAQPCL
Nucleotide Sequence CTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAGCCCGCCTGCCAGTCCTAGCTGCACAGGGCAGCTGGGCCCAACCCTGTCTGTAG
CircID chr8:143915714|143915938
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MVFLALACTVGLAGDGGPQSASLPVYPEKP
Nucleotide Sequence CTGGTGTTTCTAGCACTGGCCTGCACGGTGGGCCTTGCTGGGGACGGGGGGCCCCAGTCAGCCTCTCTCCCAGTCTACCCAGAGAAGCCC
CircID chr8:143915714|143915938
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MSSQGSPPASPSCTGQLGPTLSVEGPGVSSTGLHGGPCWGRGAPVSLSPSLPREA
Nucleotide Sequence CTGTCTTCCCAGGGTAGCCCGCCTGCCAGTCCTAGCTGCACAGGGCAGCTGGGCCCAACCCTGTCTGTAGAGGGCCCTGGTGTTTCTAGCACTGGCCTGCACGGTGGGCCTTGCTGGGGACGGGGGGCCCCAGTCAGCCTCTCTCCCAGTCTACCCAGAGAAGCC
CircID chr8:143915714|143915938
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MPCAARTGRRATLGRQEGGLGPSLGPSKAPGCVSG
Nucleotide Sequence CTGCCCTGTGCAGCTAGGACTGGCAGGCGGGCTACCCTGGGAAGACAGGAGGGTGGGCTGGGGCCCAGCTTGGGACCCTCCAAGGCACCTGGCTGTGTGAGTGGC
CircID chr8:143915714|143915938
ORF Type ORF5
Protein Length 69
Nucleotide Length 210
Protein Sequence MGRLGERLTGAPRPQQGPPCRPVLETPGPSTDRVGPSCPVQLGLAGGLPWEDRRVGWGPAWDPPRHLAV
Nucleotide Sequence CTGGGTAGACTGGGAGAGAGGCTGACTGGGGCCCCCCGTCCCCAGCAAGGCCCACCGTGCAGGCCAGTGCTAGAAACACCAGGGCCCTCTACAGACAGGGTTGGGCCCAGCTGCCCTGTGCAGCTAGGACTGGCAGGCGGGCTACCCTGGGAAGACAGGAGGGTGGGCTGGGGCCCAGCTTGGGACCCTCCAAGGCACCTGGCTGTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab