CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143915858|143916061
Strand +
CircType exon
Host Gene ENSG00000178209.13;
Algorism CIRI2;
Sequence CAAAAAGACCAGACTAATATATTAATATATATCTGCTGTCCAGACAGCCTGTATCTTGGGGGACAGGGCTGGCCCAGCCCTGCTGGCCGCCTCACCCCCTCGGGTCTCCTCACTCCCTTCTACCTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAGCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143915858|143916061 hsa-miR-10a-5p 0 0 1
chr8:143915858|143916061 hsa-miR-10a-3p 0 0 1
chr8:143915858|143916061 hsa-miR-10b-5p 0 0 1
chr8:143915858|143916061 hsa-miR-10b-3p 0 0 1
chr8:143915858|143916061 hsa-miR-214-5p 0 0 1
chr8:143915858|143916061 hsa-miR-214-3p 0 0 1
chr8:143915858|143916061 hsa-miR-422a 0 0 1
chr8:143915858|143916061 hsa-miR-506-5p 0 0 1
chr8:143915858|143916061 hsa-miR-506-3p 0 0 1
chr8:143915858|143916061 hsa-miR-626 0 0 1
chr8:143915858|143916061 hsa-miR-656-5p 0 0 1
chr8:143915858|143916061 hsa-miR-656-3p 0 0 1
chr8:143915858|143916061 hsa-miR-541-5p 0 0 1
chr8:143915858|143916061 hsa-miR-541-3p 0 0 1
chr8:143915858|143916061 hsa-miR-889-5p 0 0 1
chr8:143915858|143916061 hsa-miR-889-3p 0 0 1
chr8:143915858|143916061 hsa-miR-922 0 0 1
chr8:143915858|143916061 hsa-miR-1231 0 0 1
chr8:143915858|143916061 hsa-miR-146b-3p 0 0 1
chr8:143915858|143916061 hsa-miR-339-5p 0 0 1
chr8:143915858|143916061 hsa-miR-654-5p 0 0 1
chr8:143915858|143916061 hsa-miR-361-3p 0 0 1
chr8:143915858|143916061 hsa-miR-1207-5p 1 0 1
chr8:143915858|143916061 hsa-miR-1302 0 0 1
chr8:143915858|143916061 hsa-miR-7 0 0 1
chr8:143915858|143916061 hsa-miR-378 0 0 1
chr8:143915858|143916061 hsa-miR-124 0 0 1
chr8:143915858|143916061 hsa-miR-608 1 0 0
chr8:143915858|143916061 hsa-miR-762 1 0 0
chr8:143915858|143916061 hsa-miR-2861 1 0 0
chr8:143915858|143916061 hsa-miR-4270 1 0 0
chr8:143915858|143916061 hsa-miR-4271 1 0 0
chr8:143915858|143916061 hsa-miR-3665 1 0 0
chr8:143915858|143916061 hsa-miR-4507 1 0 0
chr8:143915858|143916061 hsa-miR-1587 1 0 0
chr8:143915858|143916061 hsa-miR-4651 1 0 0
chr8:143915858|143916061 hsa-miR-4654 1 0 0
chr8:143915858|143916061 hsa-miR-4675 1 0 0
chr8:143915858|143916061 hsa-miR-4688 1 0 0
chr8:143915858|143916061 hsa-miR-4689 1 0 0
chr8:143915858|143916061 hsa-miR-4706 1 0 0
chr8:143915858|143916061 hsa-miR-4739 1 0 0
chr8:143915858|143916061 hsa-miR-4784 1 0 0
chr8:143915858|143916061 hsa-miR-6090 1 0 0
chr8:143915858|143916061 hsa-miR-6125 1 0 0
chr8:143915858|143916061 hsa-miR-7150 1 0 0
chr8:143915858|143916061 hsa-miR-8072 1 0 0
chr8:143915858|143916061 hsa-miR-8085 1 0 0
chr8:143915858|143916061 hsa-miR-8089 1 0 0
chr8:143915858|143916061 hsa-miR-134-5p 1 0 0
chr8:143915858|143916061 hsa-miR-150-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6734-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6765-5p 1 0 0
chr8:143915858|143916061 hsa-miR-671-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3150a-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6861-5p 1 0 0
chr8:143915858|143916061 hsa-miR-7106-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6894-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4687-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6799-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1236-5p 1 0 0
chr8:143915858|143916061 hsa-miR-7851-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6089 1 0 0
chr8:143915858|143916061 hsa-miR-4695-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6867-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3064-5p 1 0 0
chr8:143915858|143916061 hsa-miR-197-5p 1 0 0
chr8:143915858|143916061 hsa-miR-874-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6742-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6829-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6732-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3190-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6798-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6765-3p 1 0 0
chr8:143915858|143916061 hsa-miR-3150b-3p 1 0 0
chr8:143915858|143916061 hsa-miR-5008-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1343-3p 1 0 0
chr8:143915858|143916061 hsa-miR-1226-5p 1 0 0
chr8:143915858|143916061 hsa-miR-204-3p 1 0 0
chr8:143915858|143916061 hsa-miR-1228-5p 1 0 0
chr8:143915858|143916061 hsa-miR-296-3p 1 0 0
chr8:143915858|143916061 hsa-miR-7854-3p 1 0 0
chr8:143915858|143916061 hsa-miR-4787-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6824-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3162-5p 1 0 0
chr8:143915858|143916061 hsa-miR-664b-5p 1 0 0
chr8:143915858|143916061 hsa-miR-423-5p 1 0 0
chr8:143915858|143916061 hsa-miR-10400-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1233-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4763-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6769b-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6778-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6812-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6865-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6870-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6893-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1343-5p 1 0 0
chr8:143915858|143916061 hsa-miR-5001-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6743-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6752-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6756-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6803-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6851-5p 1 0 0
chr8:143915858|143916061 hsa-miR-10401-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1249-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6751-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6763-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6774-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6779-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6797-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3620-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4728-5p 1 0 0
chr8:143915858|143916061 hsa-miR-5196-5p 1 0 0
chr8:143915858|143916061 hsa-miR-328-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4632-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4685-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4745-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4749-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6846-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6848-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6858-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6889-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6831-5p 1 0 0
chr8:143915858|143916061 hsa-miR-4758-5p 1 0 0
chr8:143915858|143916061 hsa-miR-3940-5p 1 0 0
chr8:143915858|143916061 hsa-miR-1914-3p 1 0 0
chr8:143915858|143916061 hsa-miR-7151-3p 1 0 0
chr8:143915858|143916061 hsa-miR-4646-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6891-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6790-5p 1 0 0
chr8:143915858|143916061 hsa-miR-6791-5p 1 0 0
chr8:143915858|143916061 hsa-miR-769-3p 1 0 0
chr8:143915858|143916061 hsa-miR-10400-3p 1 0 0
chr8:143915858|143916061 hsa-miR-6504-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143915858|143916061
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MYLGGQGWPSPAGRLTPSGLLTPFYLPLTQPGALEGPKLGPSPPSCLPRVAR
Nucleotide Sequence CTGTATCTTGGGGGACAGGGCTGGCCCAGCCCTGCTGGCCGCCTCACCCCCTCGGGTCTCCTCACTCCCTTCTACCTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAGCCCGC
CircID chr8:143915858|143916061
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MGDRAGPALLAASPPRVSSLPSTCHSHSQVPWRVPSWAPAHPPVFPG
Nucleotide Sequence TTGGGGGACAGGGCTGGCCCAGCCCTGCTGGCCGCCTCACCCCCTCGGGTCTCCTCACTCCCTTCTACCTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAG
CircID chr8:143915858|143916061
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MLSRQPVSWGTGLAQPCWPPHPLGSPHSLLPATHTARCLGGSQAGPQPTLLSSQGSP
Nucleotide Sequence CTGCTGTCCAGACAGCCTGTATCTTGGGGGACAGGGCTGGCCCAGCCCTGCTGGCCGCCTCACCCCCTCGGGTCTCCTCACTCCCTTCTACCTGCCACTCACACAGCCAGGTGCCTTGGAGGGTCCCAAGCTGGGCCCCAGCCCACCCTCCTGTCTTCCCAGGGTAGCCCG
CircID chr8:143915858|143916061
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MCEWQVEGSEETRGGEAASRAGPALSPKIQAVWTADIY
Nucleotide Sequence CTGTGTGAGTGGCAGGTAGAAGGGAGTGAGGAGACCCGAGGGGGTGAGGCGGCCAGCAGGGCTGGGCCAGCCCTGTCCCCCAAGATACAGGCTGTCTGGACAGCAGATATATATTAA
CircID chr8:143915858|143916061
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MGQPCPPRYRLSGQQIYINILVWSF
Nucleotide Sequence CTGGGCCAGCCCTGTCCCCCAAGATACAGGCTGTCTGGACAGCAGATATATATTAATATATTAGTCTGGTCTTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab