CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143919573|143919815
Strand -
CircType exon
Host Gene ENSG00000178209.13;
Algorism CIRI2;
Sequence GCCCGCCTTCACGGCCTCGTGGACATACAGGCGCTGGTTCCGCACGGGGTCCACCAGGAAGCCAGTGGCCGCCTGCGCCTCCAGCAGGAGCGCAGCCGTTGTGGCTCTCAGCAGGCCCCGGCGCATGGCCTCGTAGATGGACACCTTCTCCTTGGTGTCCTCCAGGTAGATGCCGGCGAGGCAGCCACTGCCCTGCAGCAGCGTCCGCACGGAGCCCAGCTCCGAAAGGTCCTTGACCGTCGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143919573|143919815 hsa-miR-34a-5p 0 0 1
chr8:143919573|143919815 hsa-miR-34a-3p 0 0 1
chr8:143919573|143919815 hsa-miR-370-5p 0 0 1
chr8:143919573|143919815 hsa-miR-370-3p 0 0 1
chr8:143919573|143919815 hsa-miR-449a 0 1 1
chr8:143919573|143919815 hsa-miR-567 0 0 1
chr8:143919573|143919815 hsa-miR-604 0 0 1
chr8:143919573|143919815 hsa-miR-619-5p 0 0 1
chr8:143919573|143919815 hsa-miR-619-3p 0 0 1
chr8:143919573|143919815 hsa-miR-647 0 0 1
chr8:143919573|143919815 hsa-miR-650 0 0 1
chr8:143919573|143919815 hsa-miR-449b-5p 0 0 1
chr8:143919573|143919815 hsa-miR-449b-3p 0 0 1
chr8:143919573|143919815 hsa-miR-765 0 0 1
chr8:143919573|143919815 hsa-miR-892b 0 1 1
chr8:143919573|143919815 hsa-miR-297 0 0 1
chr8:143919573|143919815 hsa-miR-1205 0 1 1
chr8:143919573|143919815 hsa-miR-1287-5p 0 0 1
chr8:143919573|143919815 hsa-miR-1287-3p 0 0 1
chr8:143919573|143919815 hsa-miR-1197 0 0 1
chr8:143919573|143919815 hsa-miR-34c-5p 0 0 1
chr8:143919573|143919815 hsa-miR-337-5p 0 0 1
chr8:143919573|143919815 hsa-miR-516a-3p 0 0 1
chr8:143919573|143919815 hsa-miR-611 0 1 0
chr8:143919573|143919815 hsa-miR-762 1 0 0
chr8:143919573|143919815 hsa-miR-2861 0 1 0
chr8:143919573|143919815 hsa-miR-3195 0 1 0
chr8:143919573|143919815 hsa-miR-3197 0 1 0
chr8:143919573|143919815 hsa-miR-4254 0 1 0
chr8:143919573|143919815 hsa-miR-3937 0 1 0
chr8:143919573|143919815 hsa-miR-4428 0 1 0
chr8:143919573|143919815 hsa-miR-4443 0 1 0
chr8:143919573|143919815 hsa-miR-4449 1 0 0
chr8:143919573|143919815 hsa-miR-4456 0 1 0
chr8:143919573|143919815 hsa-miR-3135b 0 1 0
chr8:143919573|143919815 hsa-miR-4479 1 0 0
chr8:143919573|143919815 hsa-miR-4516 0 1 0
chr8:143919573|143919815 hsa-miR-4663 1 1 0
chr8:143919573|143919815 hsa-miR-4674 0 1 0
chr8:143919573|143919815 hsa-miR-4754 0 1 0
chr8:143919573|143919815 hsa-miR-4767 1 1 0
chr8:143919573|143919815 hsa-miR-6132 0 1 0
chr8:143919573|143919815 hsa-miR-9899 1 0 0
chr8:143919573|143919815 hsa-miR-15a-3p 0 1 0
chr8:143919573|143919815 hsa-miR-4665-3p 1 0 0
chr8:143919573|143919815 hsa-miR-3692-5p 0 1 0
chr8:143919573|143919815 hsa-miR-6089 1 1 0
chr8:143919573|143919815 hsa-miR-7847-3p 0 1 0
chr8:143919573|143919815 hsa-miR-6727-5p 1 0 0
chr8:143919573|143919815 hsa-miR-3187-3p 1 0 0
chr8:143919573|143919815 hsa-miR-6827-5p 1 1 0
chr8:143919573|143919815 hsa-miR-6850-5p 1 1 0
chr8:143919573|143919815 hsa-miR-6882-3p 0 1 0
chr8:143919573|143919815 hsa-miR-1226-5p 1 0 0
chr8:143919573|143919815 hsa-miR-3186-5p 0 1 0
chr8:143919573|143919815 hsa-miR-1908-3p 1 0 0
chr8:143919573|143919815 hsa-miR-6784-5p 0 1 0
chr8:143919573|143919815 hsa-miR-4800-5p 0 1 0
chr8:143919573|143919815 hsa-miR-490-3p 0 1 0
chr8:143919573|143919815 hsa-miR-6761-5p 0 1 0
chr8:143919573|143919815 hsa-miR-3912-5p 0 1 0
chr8:143919573|143919815 hsa-miR-4787-3p 0 1 0
chr8:143919573|143919815 hsa-miR-6775-5p 1 0 0
chr8:143919573|143919815 hsa-miR-5001-5p 1 1 0
chr8:143919573|143919815 hsa-miR-6726-5p 1 0 0
chr8:143919573|143919815 hsa-miR-3620-5p 1 0 0
chr8:143919573|143919815 hsa-miR-6836-5p 0 1 0
chr8:143919573|143919815 hsa-miR-4632-5p 0 1 0
chr8:143919573|143919815 hsa-miR-4745-5p 1 0 0
chr8:143919573|143919815 hsa-miR-6735-5p 0 1 0
chr8:143919573|143919815 hsa-miR-6848-5p 1 0 0
chr8:143919573|143919815 hsa-miR-7843-5p 0 1 0
chr8:143919573|143919815 hsa-miR-6762-5p 1 0 0
chr8:143919573|143919815 hsa-miR-10400-3p 1 1 0
chr8:143919573|143919815 hsa-miR-6884-5p 0 1 0
chr8:143919573|143919815 hsa-miR-10394-5p 0 1 0
chr8:143919573|143919815 hsa-miR-147b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143919573|143919815
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MVPHGVHQEASGRLRLQQERSRCGSQQAPAHGLVDGHLLLGVLQVDAGEAATALQQRPHGAQLRKVLDRR
Nucleotide Sequence CTGGTTCCGCACGGGGTCCACCAGGAAGCCAGTGGCCGCCTGCGCCTCCAGCAGGAGCGCAGCCGTTGTGGCTCTCAGCAGGCCCCGGCGCATGGCCTCGTAGATGGACACCTTCTCCTTGGTGTCCTCCAGGTAGATGCCGGCGAGGCAGCCACTGCCCTGCAGCAGCGTCCGCACGGAGCCCAGCTCCGAAAGGTCCTTGACCGTCGT
CircID chr8:143919573|143919815
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MWLSAGPGAWPRRWTPSPWCPPGRCRRGSHCPAAASARSPAPKGP
Nucleotide Sequence TTGTGGCTCTCAGCAGGCCCCGGCGCATGGCCTCGTAGATGGACACCTTCTCCTTGGTGTCCTCCAGGTAGATGCCGGCGAGGCAGCCACTGCCCTGCAGCAGCGTCCGCACGGAGCCCAGCTCCGAAAGGTCCTTGA
CircID chr8:143919573|143919815
ORF Type ORF3
Protein Length 73
Nucleotide Length 219
Protein Sequence MGSVRTLLQGSGCLAGIYLEDTKEKVSIYEAMRRGLLRATTAALLLEAQAATGFLVDPVRNQRLYVHEAVKAG
Nucleotide Sequence CTGGGCTCCGTGCGGACGCTGCTGCAGGGCAGTGGCTGCCTCGCCGGCATCTACCTGGAGGACACCAAGGAGAAGGTGTCCATCTACGAGGCCATGCGCCGGGGCCTGCTGAGAGCCACAACGGCTGCGCTCCTGCTGGAGGCGCAGGCGGCCACTGGCTTCCTGGTGGACCCCGTGCGGAACCAGCGCCTGTATGTCCACGAGGCCGTGAAGGCGGGC
CircID chr8:143919573|143919815
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MRSCWRRRRPLASWWTPCGTSACMSTRP
Nucleotide Sequence CTGCGCTCCTGCTGGAGGCGCAGGCGGCCACTGGCTTCCTGGTGGACCCCGTGCGGAACCAGCGCCTGTATGTCCACGAGGCCGTGA
CircID chr8:143919573|143919815
ORF Type ORF5
Protein Length 61
Nucleotide Length 183
Protein Sequence MPRRHLPGGHQGEGVHLRGHAPGPAESHNGCAPAGGAGGHWLPGGPRAEPAPVCPRGREGG
Nucleotide Sequence CTGCCTCGCCGGCATCTACCTGGAGGACACCAAGGAGAAGGTGTCCATCTACGAGGCCATGCGCCGGGGCCTGCTGAGAGCCACAACGGCTGCGCTCCTGCTGGAGGCGCAGGCGGCCACTGGCTTCCTGGTGGACCCCGTGCGGAACCAGCGCCTGTATGTCCACGAGGCCGTGAAGGCGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab