CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143923878|143923967
Strand -
CircType exon
Host Gene ENSG00000178209.13;
Algorism CIRI2;
Sequence CTTGGCTTTCAGCCGCTCGACTTCCTCCAGCGCCGCCTTCCGCTGCCGTGCGGCCTCCTCCTCGGCCGCCAGGCTCTTCTGCACGCGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143923878|143923967 hsa-miR-765 0 0 1
chr8:143923878|143923967 hsa-miR-298 0 0 1
chr8:143923878|143923967 hsa-miR-885-3p 1 1 1
chr8:143923878|143923967 hsa-miR-151-5p 0 0 1
chr8:143923878|143923967 hsa-miR-650 1 0 0
chr8:143923878|143923967 hsa-miR-658 1 0 0
chr8:143923878|143923967 hsa-miR-1268a 1 0 0
chr8:143923878|143923967 hsa-miR-2861 1 0 0
chr8:143923878|143923967 hsa-miR-3141 1 0 0
chr8:143923878|143923967 hsa-miR-3937 1 0 0
chr8:143923878|143923967 hsa-miR-1268b 1 0 0
chr8:143923878|143923967 hsa-miR-3135b 1 1 0
chr8:143923878|143923967 hsa-miR-4467 1 0 0
chr8:143923878|143923967 hsa-miR-3960 1 0 0
chr8:143923878|143923967 hsa-miR-4656 1 0 0
chr8:143923878|143923967 hsa-miR-4739 1 0 0
chr8:143923878|143923967 hsa-miR-6125 1 1 0
chr8:143923878|143923967 hsa-miR-6127 1 0 0
chr8:143923878|143923967 hsa-miR-6129 1 0 0
chr8:143923878|143923967 hsa-miR-7150 1 0 0
chr8:143923878|143923967 hsa-miR-7706 1 0 0
chr8:143923878|143923967 hsa-miR-8072 1 0 0
chr8:143923878|143923967 hsa-miR-12115 1 0 0
chr8:143923878|143923967 hsa-miR-6765-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6894-5p 1 0 0
chr8:143923878|143923967 hsa-miR-766-5p 1 1 0
chr8:143923878|143923967 hsa-miR-6089 1 1 0
chr8:143923878|143923967 hsa-miR-6880-5p 1 0 0
chr8:143923878|143923967 hsa-miR-7847-3p 1 0 0
chr8:143923878|143923967 hsa-miR-4695-5p 0 1 0
chr8:143923878|143923967 hsa-miR-4722-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6798-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6835-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6749-5p 1 0 0
chr8:143923878|143923967 hsa-miR-149-3p 1 0 0
chr8:143923878|143923967 hsa-miR-7846-3p 1 0 0
chr8:143923878|143923967 hsa-miR-5197-3p 0 1 0
chr8:143923878|143923967 hsa-miR-3177-3p 0 1 0
chr8:143923878|143923967 hsa-miR-10400-5p 1 0 0
chr8:143923878|143923967 hsa-miR-1233-5p 1 0 0
chr8:143923878|143923967 hsa-miR-4763-3p 1 0 0
chr8:143923878|143923967 hsa-miR-6787-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6865-5p 1 0 0
chr8:143923878|143923967 hsa-miR-5001-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6815-5p 1 1 0
chr8:143923878|143923967 hsa-miR-6851-5p 1 0 0
chr8:143923878|143923967 hsa-miR-7107-5p 1 0 0
chr8:143923878|143923967 hsa-miR-1249-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6797-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6780b-5p 1 0 0
chr8:143923878|143923967 hsa-miR-10396b-5p 1 0 0
chr8:143923878|143923967 hsa-miR-1237-5p 1 0 0
chr8:143923878|143923967 hsa-miR-449c-5p 1 0 0
chr8:143923878|143923967 hsa-miR-4632-5p 1 0 0
chr8:143923878|143923967 hsa-miR-4725-3p 1 0 0
chr8:143923878|143923967 hsa-miR-6729-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6848-5p 1 0 0
chr8:143923878|143923967 hsa-miR-6858-5p 1 1 0
chr8:143923878|143923967 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:143923878|143923967
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence LAFSRSTSSSAAFRCRAASSSAARLFCTR
Nucleotide Sequence TTGGCTTTCAGCCGCTCGACTTCCTCCAGCGCCGCCTTCCGCTGCCGTGCGGCCTCCTCCTCGGCCGCCAGGCTCTTCTGCACGCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab