CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143926977|143927290
Strand -
CircType exon
Host Gene ENSG00000178209.13;
Algorism CIRI2;
Sequence CTCCTGGATGACACTCTCTGATCCCGACTGGACCTTGGGCTTCTTGGCCGGGGAGGCCACCGGCTCAAGCTGCGCCTTGTACGTCACCAGCTGGAGTTCATAGTCCTGTGGCAATGCACTGCGGTCAGCCACCAGCTCTGCCCTCCGATGGCCCCTGCCCAGCCCCTAAACCCTCACATGGGCTTTCCCTGGCATGGCCCAGGCTCAGGGAAAGCCCGCCATCATCCTGGCAACGGTCCCGGACTTGGGGCCTGGTGCAGGCGGCTGGGCCTCACCTTGATGGCGTTGATGTACTGTTTCGCAAACCTCTGGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143926977|143927290 hsa-miR-33a-5p 0 0 1
chr8:143926977|143927290 hsa-miR-33a-3p 0 0 1
chr8:143926977|143927290 hsa-miR-148a-5p 0 0 1
chr8:143926977|143927290 hsa-miR-148a-3p 0 0 1
chr8:143926977|143927290 hsa-miR-152-5p 0 0 1
chr8:143926977|143927290 hsa-miR-152-3p 0 0 1
chr8:143926977|143927290 hsa-miR-383-5p 0 0 1
chr8:143926977|143927290 hsa-miR-383-3p 0 0 1
chr8:143926977|143927290 hsa-miR-148b-5p 0 0 1
chr8:143926977|143927290 hsa-miR-148b-3p 0 0 1
chr8:143926977|143927290 hsa-miR-612 -17 1 1
chr8:143926977|143927290 hsa-miR-624-5p 0 0 1
chr8:143926977|143927290 hsa-miR-624-3p 0 0 1
chr8:143926977|143927290 hsa-miR-629-5p 0 0 1
chr8:143926977|143927290 hsa-miR-629-3p 0 0 1
chr8:143926977|143927290 hsa-miR-33b-5p 0 0 1
chr8:143926977|143927290 hsa-miR-33b-3p 0 0 1
chr8:143926977|143927290 hsa-miR-661 -5 0 1
chr8:143926977|143927290 hsa-miR-766-5p 0 0 1
chr8:143926977|143927290 hsa-miR-766-3p 0 0 1
chr8:143926977|143927290 hsa-miR-665 3 0 1
chr8:143926977|143927290 hsa-miR-1202 -9 0 1
chr8:143926977|143927290 hsa-miR-1294 -15 0 1
chr8:143926977|143927290 hsa-miR-767-5p 1 0 1
chr8:143926977|143927290 hsa-miR-508-5p -9 0 1
chr8:143926977|143927290 hsa-miR-1207-3p -3 0 1
chr8:143926977|143927290 hsa-miR-1207-5p -17 1 1
chr8:143926977|143927290 hsa-miR-125a-5p 0 0 1
chr8:143926977|143927290 hsa-miR-524-3p -9 0 1
chr8:143926977|143927290 hsa-miR-525-3p -9 0 1
chr8:143926977|143927290 hsa-miR-1274a 0 0 1
chr8:143926977|143927290 hsa-miR-125b 0 0 1
chr8:143926977|143927290 hsa-miR-138 0 0 1
chr8:143926977|143927290 hsa-miR-1285 0 0 1
chr8:143926977|143927290 hsa-miR-450a 0 0 1
chr8:143926977|143927290 hsa-miR-663 0 0 1
chr8:143926977|143927290 hsa-miR-499-3p 0 0 1
chr8:143926977|143927290 hsa-miR-101 0 0 1
chr8:143926977|143927290 hsa-miR-638 -19 1 0
chr8:143926977|143927290 hsa-miR-762 -28 1 0
chr8:143926977|143927290 hsa-miR-3153 -6 1 0
chr8:143926977|143927290 hsa-miR-4299 -11 1 0
chr8:143926977|143927290 hsa-miR-4316 -13 1 0
chr8:143926977|143927290 hsa-miR-4317 -4 1 0
chr8:143926977|143927290 hsa-miR-3659 -1 1 0
chr8:143926977|143927290 hsa-miR-4456 -8 1 0
chr8:143926977|143927290 hsa-miR-4492 -16 1 0
chr8:143926977|143927290 hsa-miR-4497 -11 1 0
chr8:143926977|143927290 hsa-miR-4498 -19 1 0
chr8:143926977|143927290 hsa-miR-4505 -16 1 0
chr8:143926977|143927290 hsa-miR-4748 -13 1 0
chr8:143926977|143927290 hsa-miR-5192 0 1 0
chr8:143926977|143927290 hsa-miR-6085 -17 1 0
chr8:143926977|143927290 hsa-miR-6860 -20 1 0
chr8:143926977|143927290 hsa-miR-12128 -8 1 0
chr8:143926977|143927290 hsa-miR-138-5p -15 1 0
chr8:143926977|143927290 hsa-miR-4700-3p -9 1 0
chr8:143926977|143927290 hsa-miR-671-5p -17 1 0
chr8:143926977|143927290 hsa-miR-6721-5p -22 1 0
chr8:143926977|143927290 hsa-miR-4711-5p -5 1 0
chr8:143926977|143927290 hsa-miR-3130-3p -5 1 0
chr8:143926977|143927290 hsa-miR-5006-5p -5 1 0
chr8:143926977|143927290 hsa-miR-3691-3p 0 1 0
chr8:143926977|143927290 hsa-miR-6763-3p -13 1 0
chr8:143926977|143927290 hsa-miR-4693-3p 0 1 0
chr8:143926977|143927290 hsa-miR-1229-5p -26 1 0
chr8:143926977|143927290 hsa-miR-1908-3p -14 1 0
chr8:143926977|143927290 hsa-miR-6501-5p -8 1 0
chr8:143926977|143927290 hsa-miR-4733-3p -7 1 0
chr8:143926977|143927290 hsa-miR-6789-5p -16 1 0
chr8:143926977|143927290 hsa-miR-6746-3p -5 1 0
chr8:143926977|143927290 hsa-miR-6508-3p -6 1 0
chr8:143926977|143927290 hsa-miR-7113-5p -3 1 0
chr8:143926977|143927290 hsa-miR-4485-5p -6 1 0
chr8:143926977|143927290 hsa-miR-4763-3p -24 1 0
chr8:143926977|143927290 hsa-miR-5001-5p -19 1 0
chr8:143926977|143927290 hsa-miR-6803-5p -35 1 0
chr8:143926977|143927290 hsa-miR-6813-5p -17 1 0
chr8:143926977|143927290 hsa-miR-6722-3p -21 1 0
chr8:143926977|143927290 hsa-miR-6879-5p -21 1 0
chr8:143926977|143927290 hsa-miR-5189-5p -17 1 0
chr8:143926977|143927290 hsa-miR-1909-3p -18 1 0
chr8:143926977|143927290 hsa-miR-4632-5p -16 1 0
chr8:143926977|143927290 hsa-miR-6735-5p -18 1 0
chr8:143926977|143927290 hsa-miR-6848-5p -29 1 0
chr8:143926977|143927290 hsa-miR-3187-5p -16 1 0
chr8:143926977|143927290 hsa-miR-6845-5p -14 1 0
chr8:143926977|143927290 hsa-miR-6511a-5p 0 1 0
chr8:143926977|143927290 hsa-miR-1199-5p -9 1 0
chr8:143926977|143927290 hsa-miR-7843-5p -15 1 0
chr8:143926977|143927290 hsa-miR-6791-5p -13 1 0
chr8:143926977|143927290 hsa-miR-6762-5p -18 1 0
chr8:143926977|143927290 hsa-miR-3928-5p -9 1 0
chr8:143926977|143927290 hsa-miR-6764-5p -18 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143926977|143927290
ORF Type ORF1
Protein Length 95
Nucleotide Length 285
Protein Sequence MDLGLLGRGGHRLKLRLVRHQLEFIVLWQCTAVSHQLCPPMAPAQPLNPHMGFPWHGPGSGKARHHPGNGPGLGAWCRRLGLTLMALMYCFANLW
Nucleotide Sequence CTGGACCTTGGGCTTCTTGGCCGGGGAGGCCACCGGCTCAAGCTGCGCCTTGTACGTCACCAGCTGGAGTTCATAGTCCTGTGGCAATGCACTGCGGTCAGCCACCAGCTCTGCCCTCCGATGGCCCCTGCCCAGCCCCTAAACCCTCACATGGGCTTTCCCTGGCATGGCCCAGGCTCAGGGAAAGCCCGCCATCATCCTGGCAACGGTCCCGGACTTGGGGCCTGGTGCAGGCGGCTGGGCCTCACCTTGATGGCGTTGATGTACTGTTTCGCAAACCTCTGG
CircID chr8:143926977|143927290
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MTLSDPDWTLGFLAGEATGSSCALYVTSWSS
Nucleotide Sequence ATGACACTCTCTGATCCCGACTGGACCTTGGGCTTCTTGGCCGGGGAGGCCACCGGCTCAAGCTGCGCCTTGTACGTCACCAGCTGGAGTTCATAG
CircID chr8:143926977|143927290
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MAQAQGKPAIILATVPDLGPGAGGWASP
Nucleotide Sequence ATGGCCCAGGCTCAGGGAAAGCCCGCCATCATCCTGGCAACGGTCCCGGACTTGGGGCCTGGTGCAGGCGGCTGGGCCTCACCTTGA
CircID chr8:143926977|143927290
ORF Type ORF4
Protein Length 99
Nucleotide Length 297
Protein Sequence MIPTGPWASWPGRPPAQAAPCTSPAGVHSPVAMHCGQPPALPSDGPCPAPKPSHGLSLAWPRLRESPPSSWQRSRTWGLVQAAGPHLDGVDVLFRKPLA
Nucleotide Sequence CTGATCCCGACTGGACCTTGGGCTTCTTGGCCGGGGAGGCCACCGGCTCAAGCTGCGCCTTGTACGTCACCAGCTGGAGTTCATAGTCCTGTGGCAATGCACTGCGGTCAGCCACCAGCTCTGCCCTCCGATGGCCCCTGCCCAGCCCCTAAACCCTCACATGGGCTTTCCCTGGCATGGCCCAGGCTCAGGGAAAGCCCGCCATCATCCTGGCAACGGTCCCGGACTTGGGGCCTGGTGCAGGCGGCTGGGCCTCACCTTGATGGCGTTGATGTACTGTTTCGCAAACCTCTGGCA
CircID chr8:143926977|143927290
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MSLGHARESPCEGLGAGQGPSEGRAGG
Nucleotide Sequence CTGAGCCTGGGCCATGCCAGGGAAAGCCCATGTGAGGGTTTAGGGGCTGGGCAGGGGCCATCGGAGGGCAGAGCTGGTGGCTGA
CircID chr8:143926977|143927290
ORF Type ORF6
Protein Length 54
Nucleotide Length 162
Protein Sequence MGRGHRRAELVADRSALPQDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQE
Nucleotide Sequence CTGGGCAGGGGCCATCGGAGGGCAGAGCTGGTGGCTGACCGCAGTGCATTGCCACAGGACTATGAACTCCAGCTGGTGACGTACAAGGCGCAGCTTGAGCCGGTGGCCTCCCCGGCCAAGAAGCCCAAGGTCCAGTCGGGATCAGAGAGTGTCATCCAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab