CircRNA Information

General Information
circRNA Basic Information
CircID chr8:143991721|143991949
Strand +
CircType exon
Host Gene ENSG00000178719.15;
Algorism CIRI2;
Sequence CTCCGCAACAAAAGTGAACACAGACACCGTGGACAGGGTCACCGACAGCTGCAAGGTCAGCACTAGGAACACCTGGGGAAGGAGCCGCTCAGAGTCATCCGCTGGGAGCCACAGCCCCCACCGCCTTGGAGATGCCCCTACCCACCTTGCGGATGAAGGCCTGTCGGATGCTCTTGTCATCCCAGTTGGTGGCAGGGAAGTCCTGGTTGTCATAGTAGGATGGGGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:143991721|143991949 hsa-miR-10a-5p 0 0 1
chr8:143991721|143991949 hsa-miR-10a-3p 0 0 1
chr8:143991721|143991949 hsa-miR-10b-5p 0 0 1
chr8:143991721|143991949 hsa-miR-10b-3p 0 0 1
chr8:143991721|143991949 hsa-miR-205-5p 0 0 1
chr8:143991721|143991949 hsa-miR-205-3p 0 0 1
chr8:143991721|143991949 hsa-miR-335-5p 0 0 1
chr8:143991721|143991949 hsa-miR-335-3p 0 0 1
chr8:143991721|143991949 hsa-miR-384 0 0 1
chr8:143991721|143991949 hsa-miR-425-5p 0 0 1
chr8:143991721|143991949 hsa-miR-425-3p 0 0 1
chr8:143991721|143991949 hsa-miR-520f-5p 0 0 1
chr8:143991721|143991949 hsa-miR-520f-3p 0 0 1
chr8:143991721|143991949 hsa-miR-504-5p 0 0 1
chr8:143991721|143991949 hsa-miR-504-3p 0 0 1
chr8:143991721|143991949 hsa-miR-617 0 0 1
chr8:143991721|143991949 hsa-miR-658 0 0 1
chr8:143991721|143991949 hsa-miR-1301-5p 0 0 1
chr8:143991721|143991949 hsa-miR-1301-3p 0 0 1
chr8:143991721|143991949 hsa-miR-512-3p 0 0 1
chr8:143991721|143991949 hsa-miR-339-5p 0 0 1
chr8:143991721|143991949 hsa-miR-361-3p 0 0 1
chr8:143991721|143991949 hsa-miR-628-5p 0 0 1
chr8:143991721|143991949 hsa-miR-515-5p 0 0 1
chr8:143991721|143991949 hsa-miR-1274a 0 0 1
chr8:143991721|143991949 hsa-miR-549 0 0 1
chr8:143991721|143991949 hsa-miR-637 1 0 0
chr8:143991721|143991949 hsa-miR-638 1 0 0
chr8:143991721|143991949 hsa-miR-4253 1 0 0
chr8:143991721|143991949 hsa-miR-4447 1 0 0
chr8:143991721|143991949 hsa-miR-4488 1 0 0
chr8:143991721|143991949 hsa-miR-4688 1 0 0
chr8:143991721|143991949 hsa-miR-7974 1 0 0
chr8:143991721|143991949 hsa-miR-6861-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6762-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6727-5p 1 0 0
chr8:143991721|143991949 hsa-miR-197-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6742-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6793-5p 1 0 0
chr8:143991721|143991949 hsa-miR-185-3p 1 0 0
chr8:143991721|143991949 hsa-miR-4697-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6735-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6786-5p 1 0 0
chr8:143991721|143991949 hsa-miR-1229-5p 1 0 0
chr8:143991721|143991949 hsa-miR-1228-5p 1 0 0
chr8:143991721|143991949 hsa-miR-296-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6823-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6749-5p 1 0 0
chr8:143991721|143991949 hsa-miR-4787-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6789-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6825-3p 1 0 0
chr8:143991721|143991949 hsa-miR-1225-5p 1 0 0
chr8:143991721|143991949 hsa-miR-598-5p 1 0 0
chr8:143991721|143991949 hsa-miR-758-3p 1 0 0
chr8:143991721|143991949 hsa-miR-10400-5p 1 0 0
chr8:143991721|143991949 hsa-miR-1233-5p 1 0 0
chr8:143991721|143991949 hsa-miR-4763-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6769b-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6787-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6775-5p 1 0 0
chr8:143991721|143991949 hsa-miR-5001-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6743-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6752-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6756-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6769a-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6803-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6813-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6851-5p 1 0 0
chr8:143991721|143991949 hsa-miR-5196-5p 1 0 0
chr8:143991721|143991949 hsa-miR-1237-5p 1 0 0
chr8:143991721|143991949 hsa-miR-328-5p 1 0 0
chr8:143991721|143991949 hsa-miR-4685-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6848-5p 1 0 0
chr8:143991721|143991949 hsa-miR-1238-5p 1 0 0
chr8:143991721|143991949 hsa-miR-4758-5p 1 0 0
chr8:143991721|143991949 hsa-miR-3940-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6736-5p 1 0 0
chr8:143991721|143991949 hsa-miR-6801-3p 1 0 0
chr8:143991721|143991949 hsa-miR-6775-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:143991721|143991949
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MGKEPLRVIRWEPQPPPPWRCPYPPCG
Nucleotide Sequence CTGGGGAAGGAGCCGCTCAGAGTCATCCGCTGGGAGCCACAGCCCCCACCGCCTTGGAGATGCCCCTACCCACCTTGCGGATGA
CircID chr8:143991721|143991949
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MGATAPTALEMPLPTLRMKACRMLLSSQLVAGKSWLS
Nucleotide Sequence CTGGGAGCCACAGCCCCCACCGCCTTGGAGATGCCCCTACCCACCTTGCGGATGAAGGCCTGTCGGATGCTCTTGTCATCCCAGTTGGTGGCAGGGAAGTCCTGGTTGTCATAG
CircID chr8:143991721|143991949
ORF Type ORF3
Protein Length 71
Nucleotide Length 213
Protein Sequence MTTRTSLPPTGMTRASDRPSSARWVGASPRRWGLWLPADDSERLLPQVFLVLTLQLSVTLSTVSVFTFVAE
Nucleotide Sequence ATGACAACCAGGACTTCCCTGCCACCAACTGGGATGACAAGAGCATCCGACAGGCCTTCATCCGCAAGGTGGGTAGGGGCATCTCCAAGGCGGTGGGGGCTGTGGCTCCCAGCGGATGACTCTGAGCGGCTCCTTCCCCAGGTGTTCCTAGTGCTGACCTTGCAGCTGTCGGTGACCCTGTCCACGGTGTCTGTGTTCACTTTTGTTGCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab