CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144080066|144080257
Strand +
CircType exon
Host Gene ENSG00000178896.6;
Algorism CIRI2;
Sequence CATCTGCCTGTAGCACCTGCAGGGAACCCAGGGTGTCAGTCTATCAGACTCCCTCCCCAACCCCATCACACCCTTCCCTCCCTGGATTGACGGCTGCAGCTGGCTCACCTGCACATAGATATCAATCTGGGAGCGTGGGTGCAGCTGTGTGAGGATGGCTGCTTCGAAAGTCTGGCGGAGCTGCAGGCCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144080066|144080257 hsa-miR-221-5p 0 0 1
chr8:144080066|144080257 hsa-miR-221-3p 0 0 1
chr8:144080066|144080257 hsa-miR-222-5p 0 0 1
chr8:144080066|144080257 hsa-miR-222-3p 0 0 1
chr8:144080066|144080257 hsa-miR-377-5p 0 0 1
chr8:144080066|144080257 hsa-miR-377-3p 0 0 1
chr8:144080066|144080257 hsa-miR-657 0 0 1
chr8:144080066|144080257 hsa-miR-1301-5p 0 0 1
chr8:144080066|144080257 hsa-miR-1301-3p 0 0 1
chr8:144080066|144080257 hsa-miR-939-5p 0 0 1
chr8:144080066|144080257 hsa-miR-939-3p 0 0 1
chr8:144080066|144080257 hsa-miR-1205 0 0 1
chr8:144080066|144080257 hsa-miR-1321 0 1 1
chr8:144080066|144080257 hsa-miR-125a-3p 0 0 1
chr8:144080066|144080257 hsa-miR-1184 0 1 1
chr8:144080066|144080257 hsa-miR-455-5p 0 0 1
chr8:144080066|144080257 hsa-miR-342-3p 0 1 1
chr8:144080066|144080257 hsa-miR-1274a 0 0 1
chr8:144080066|144080257 hsa-miR-151-3p 0 0 1
chr8:144080066|144080257 hsa-miR-762 1 0 0
chr8:144080066|144080257 hsa-miR-1202 1 0 0
chr8:144080066|144080257 hsa-miR-3141 1 0 0
chr8:144080066|144080257 hsa-miR-3147 1 0 0
chr8:144080066|144080257 hsa-miR-3170 1 0 0
chr8:144080066|144080257 hsa-miR-4260 1 0 0
chr8:144080066|144080257 hsa-miR-4270 1 1 0
chr8:144080066|144080257 hsa-miR-4271 1 0 0
chr8:144080066|144080257 hsa-miR-3665 0 1 0
chr8:144080066|144080257 hsa-miR-4439 0 1 0
chr8:144080066|144080257 hsa-miR-4507 1 0 0
chr8:144080066|144080257 hsa-miR-4510 0 1 0
chr8:144080066|144080257 hsa-miR-4513 0 1 0
chr8:144080066|144080257 hsa-miR-4651 1 0 0
chr8:144080066|144080257 hsa-miR-4660 0 1 0
chr8:144080066|144080257 hsa-miR-4739 1 1 0
chr8:144080066|144080257 hsa-miR-5194 1 0 0
chr8:144080066|144080257 hsa-miR-5572 1 0 0
chr8:144080066|144080257 hsa-miR-5787 1 0 0
chr8:144080066|144080257 hsa-miR-6086 1 0 0
chr8:144080066|144080257 hsa-miR-6090 1 0 0
chr8:144080066|144080257 hsa-miR-6127 1 1 0
chr8:144080066|144080257 hsa-miR-6129 0 1 0
chr8:144080066|144080257 hsa-miR-6130 0 1 0
chr8:144080066|144080257 hsa-miR-6133 1 0 0
chr8:144080066|144080257 hsa-miR-9500 0 1 0
chr8:144080066|144080257 hsa-miR-3150a-3p 1 0 0
chr8:144080066|144080257 hsa-miR-7106-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6825-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6857-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6799-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6807-5p 0 1 0
chr8:144080066|144080257 hsa-miR-6757-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6730-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6890-5p 1 1 0
chr8:144080066|144080257 hsa-miR-4655-5p 1 0 0
chr8:144080066|144080257 hsa-miR-23b-5p 0 1 0
chr8:144080066|144080257 hsa-miR-6742-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6796-5p 1 0 0
chr8:144080066|144080257 hsa-miR-185-3p 1 0 0
chr8:144080066|144080257 hsa-miR-23a-5p 0 1 0
chr8:144080066|144080257 hsa-miR-6782-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6735-3p 1 1 0
chr8:144080066|144080257 hsa-miR-6786-5p 1 0 0
chr8:144080066|144080257 hsa-miR-7109-5p 1 0 0
chr8:144080066|144080257 hsa-miR-1229-5p 1 0 0
chr8:144080066|144080257 hsa-miR-193b-5p 1 0 0
chr8:144080066|144080257 hsa-miR-1228-5p 1 0 0
chr8:144080066|144080257 hsa-miR-296-3p 1 0 0
chr8:144080066|144080257 hsa-miR-6771-5p 1 0 0
chr8:144080066|144080257 hsa-miR-149-3p 1 1 0
chr8:144080066|144080257 hsa-miR-6824-5p 1 0 0
chr8:144080066|144080257 hsa-miR-3162-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6730-3p 0 1 0
chr8:144080066|144080257 hsa-miR-7113-5p 1 1 0
chr8:144080066|144080257 hsa-miR-3620-3p 0 1 0
chr8:144080066|144080257 hsa-miR-888-3p 0 1 0
chr8:144080066|144080257 hsa-miR-1207-5p 1 0 0
chr8:144080066|144080257 hsa-miR-4763-3p 1 0 0
chr8:144080066|144080257 hsa-miR-6812-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6816-5p 1 0 0
chr8:144080066|144080257 hsa-miR-1343-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6737-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6754-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6756-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6803-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6819-5p 1 0 0
chr8:144080066|144080257 hsa-miR-1249-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6751-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6763-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6779-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6780a-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6797-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6879-5p 1 0 0
chr8:144080066|144080257 hsa-miR-7111-5p 1 0 0
chr8:144080066|144080257 hsa-miR-4728-5p 1 1 0
chr8:144080066|144080257 hsa-miR-5196-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6780b-5p 1 0 0
chr8:144080066|144080257 hsa-miR-328-5p 1 0 0
chr8:144080066|144080257 hsa-miR-4685-5p 1 0 0
chr8:144080066|144080257 hsa-miR-4725-3p 1 0 0
chr8:144080066|144080257 hsa-miR-6777-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6795-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6858-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6883-5p 1 1 0
chr8:144080066|144080257 hsa-miR-365b-5p 1 0 0
chr8:144080066|144080257 hsa-miR-3940-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6758-5p 1 1 0
chr8:144080066|144080257 hsa-miR-1271-3p 1 0 0
chr8:144080066|144080257 hsa-miR-6855-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6891-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6785-5p 1 1 0
chr8:144080066|144080257 hsa-miR-6724-5p 1 0 0
chr8:144080066|144080257 hsa-miR-6791-5p 1 1 0
chr8:144080066|144080257 hsa-miR-10394-5p 0 1 0
chr8:144080066|144080257 hsa-miR-151a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:144080066|144080257
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPVAPAGNPGCQSIRLPPQPHHTLPSLD
Nucleotide Sequence CTGCCTGTAGCACCTGCAGGGAACCCAGGGTGTCAGTCTATCAGACTCCCTCCCCAACCCCATCACACCCTTCCCTCCCTGGATTGA
CircID chr8:144080066|144080257
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MQLAHLHIDINLGAWVQLCEDGCFESLAELQAH
Nucleotide Sequence CTGCAGCTGGCTCACCTGCACATAGATATCAATCTGGGAGCGTGGGTGCAGCTGTGTGAGGATGGCTGCTTCGAAAGTCTGGCGGAGCTGCAGGCCCAT
CircID chr8:144080066|144080257
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MQGTQGVSLSDSLPNPITPFPPWIDGCSWLTCT
Nucleotide Sequence CTGCAGGGAACCCAGGGTGTCAGTCTATCAGACTCCCTCCCCAACCCCATCACACCCTTCCCTCCCTGGATTGACGGCTGCAGCTGGCTCACCTGCACATAG
CircID chr8:144080066|144080257
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MGLQLRQTFEAAILTQLHPRSQIDIYVQVSQLQPSIQGGKGVMGLGRESDRLTPWVPCRCYRQM
Nucleotide Sequence ATGGGCCTGCAGCTCCGCCAGACTTTCGAAGCAGCCATCCTCACACAGCTGCACCCACGCTCCCAGATTGATATCTATGTGCAGGTGAGCCAGCTGCAGCCGTCAATCCAGGGAGGGAAGGGTGTGATGGGGTTGGGGAGGGAGTCTGATAGACTGACACCCTGGGTTCCCTGCAGGTGCTACAGGCAGATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab