CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144084722|144085115
Strand +
CircType exon
Host Gene ENSG00000197858.9;
Algorism CIRI2;
Sequence TGGGGCCAGGGGCACCCCCGGGCTCCTCAAGGCCCATTCCAGCCTCATGCAGCTGCATCCACAGTTCCAGAGCGTAGCCCAATCAAGGACCCCAACAAGAGGTGTAACGGGATCTGCCCAGAGGGGGACCCAGGGCTCACCCCCGTACCCCACCCCCCATCAGGATGGAAGACTCTCCCCAGCCTAGAGTTGAGGAGACTGGAGGCTGGTCACAGGTAGATGGCAAGGGGCAGAGGATATCTTGAGACCAAGGACCAGGAGCAAGAAGCCGACAGCGGGCATGTAGAGGCCGATGGAGACGAAGCGGGAGAGGCCGGGGAGCAAGTAGAGGAAGAAGGACTGGTGCAGGCGCTCCAGGAGGTGGTTGAGCTTGCGGAACATGCCCTCCAAAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144084722|144085115 hsa-miR-136-5p 0 0 1
chr8:144084722|144085115 hsa-miR-136-3p 0 0 1
chr8:144084722|144085115 hsa-miR-206 0 0 1
chr8:144084722|144085115 hsa-miR-326 0 1 1
chr8:144084722|144085115 hsa-miR-608 0 1 1
chr8:144084722|144085115 hsa-miR-612 0 1 1
chr8:144084722|144085115 hsa-miR-613 0 0 1
chr8:144084722|144085115 hsa-miR-618 0 0 1
chr8:144084722|144085115 hsa-miR-645 0 1 1
chr8:144084722|144085115 hsa-miR-1301-5p 0 0 1
chr8:144084722|144085115 hsa-miR-1301-3p 0 0 1
chr8:144084722|144085115 hsa-miR-924 0 0 1
chr8:144084722|144085115 hsa-miR-939-5p 0 0 1
chr8:144084722|144085115 hsa-miR-939-3p 0 0 1
chr8:144084722|144085115 hsa-miR-1234-3p 0 0 1
chr8:144084722|144085115 hsa-miR-1237-5p 0 0 1
chr8:144084722|144085115 hsa-miR-1237-3p 0 0 1
chr8:144084722|144085115 hsa-miR-1299 1 1 1
chr8:144084722|144085115 hsa-miR-1248 0 0 1
chr8:144084722|144085115 hsa-miR-513c-5p 0 0 1
chr8:144084722|144085115 hsa-miR-513c-3p 0 0 1
chr8:144084722|144085115 hsa-miR-1234 0 0 1
chr8:144084722|144085115 hsa-miR-1225-3p 1 0 1
chr8:144084722|144085115 hsa-miR-1224-5p 0 0 1
chr8:144084722|144085115 hsa-miR-615-5p 0 0 1
chr8:144084722|144085115 hsa-miR-767-5p 0 0 1
chr8:144084722|144085115 hsa-miR-485-5p 0 0 1
chr8:144084722|144085115 hsa-miR-339-3p 0 1 1
chr8:144084722|144085115 hsa-miR-509-3p 0 0 1
chr8:144084722|144085115 hsa-miR-331-3p 0 1 1
chr8:144084722|144085115 hsa-miR-875-3p 0 0 1
chr8:144084722|144085115 hsa-miR-324-3p 1 0 1
chr8:144084722|144085115 hsa-miR-342-5p 0 0 1
chr8:144084722|144085115 hsa-miR-330-5p 0 1 1
chr8:144084722|144085115 hsa-miR-574-3p 0 0 1
chr8:144084722|144085115 hsa-miR-1233 0 0 1
chr8:144084722|144085115 hsa-miR-1285 0 0 1
chr8:144084722|144085115 hsa-miR-1 0 0 1
chr8:144084722|144085115 hsa-miR-768-5p 0 0 1
chr8:144084722|144085115 hsa-miR-346 1 0 0
chr8:144084722|144085115 hsa-miR-484 0 1 0
chr8:144084722|144085115 hsa-miR-636 1 0 0
chr8:144084722|144085115 hsa-miR-661 0 1 0
chr8:144084722|144085115 hsa-miR-762 1 0 0
chr8:144084722|144085115 hsa-miR-760 1 1 0
chr8:144084722|144085115 hsa-miR-920 1 0 0
chr8:144084722|144085115 hsa-miR-1913 1 1 0
chr8:144084722|144085115 hsa-miR-1976 1 0 0
chr8:144084722|144085115 hsa-miR-4318 0 1 0
chr8:144084722|144085115 hsa-miR-4254 1 1 0
chr8:144084722|144085115 hsa-miR-4268 1 0 0
chr8:144084722|144085115 hsa-miR-4292 0 1 0
chr8:144084722|144085115 hsa-miR-3909 1 0 0
chr8:144084722|144085115 hsa-miR-1268b 1 0 0
chr8:144084722|144085115 hsa-miR-4430 0 1 0
chr8:144084722|144085115 hsa-miR-3135b 1 0 0
chr8:144084722|144085115 hsa-miR-4505 0 1 0
chr8:144084722|144085115 hsa-miR-1587 1 0 0
chr8:144084722|144085115 hsa-miR-3960 1 0 0
chr8:144084722|144085115 hsa-miR-4651 1 1 0
chr8:144084722|144085115 hsa-miR-4689 0 1 0
chr8:144084722|144085115 hsa-miR-5047 0 1 0
chr8:144084722|144085115 hsa-miR-5572 0 1 0
chr8:144084722|144085115 hsa-miR-5787 1 0 0
chr8:144084722|144085115 hsa-miR-6086 0 1 0
chr8:144084722|144085115 hsa-miR-6860 0 1 0
chr8:144084722|144085115 hsa-miR-9899 1 0 0
chr8:144084722|144085115 hsa-miR-3194-3p 1 0 0
chr8:144084722|144085115 hsa-miR-4665-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6765-5p 1 0 0
chr8:144084722|144085115 hsa-miR-3150a-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1233-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6881-3p 1 0 0
chr8:144084722|144085115 hsa-miR-486-5p 1 0 0
chr8:144084722|144085115 hsa-miR-7114-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6515-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6089 1 0 0
chr8:144084722|144085115 hsa-miR-593-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6875-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6849-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1915-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6832-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6716-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6782-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6728-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6815-3p 1 0 0
chr8:144084722|144085115 hsa-miR-1343-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6772-3p 1 1 0
chr8:144084722|144085115 hsa-miR-7109-5p 0 1 0
chr8:144084722|144085115 hsa-miR-4763-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6763-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6894-3p 1 0 0
chr8:144084722|144085115 hsa-miR-5001-3p 0 1 0
chr8:144084722|144085115 hsa-miR-7113-3p 1 0 0
chr8:144084722|144085115 hsa-miR-3667-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6878-3p 1 1 0
chr8:144084722|144085115 hsa-miR-7111-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6780a-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6830-3p 1 1 0
chr8:144084722|144085115 hsa-miR-4787-5p 1 1 0
chr8:144084722|144085115 hsa-miR-3616-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6742-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1306-5p 1 0 0
chr8:144084722|144085115 hsa-miR-3925-3p 0 1 0
chr8:144084722|144085115 hsa-miR-450a-2-3p 0 1 0
chr8:144084722|144085115 hsa-miR-7152-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1225-5p 1 0 0
chr8:144084722|144085115 hsa-miR-4776-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1236-3p 1 1 0
chr8:144084722|144085115 hsa-miR-1226-3p 1 0 0
chr8:144084722|144085115 hsa-miR-7106-3p 1 0 0
chr8:144084722|144085115 hsa-miR-660-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6720-3p 0 1 0
chr8:144084722|144085115 hsa-miR-4778-3p 0 1 0
chr8:144084722|144085115 hsa-miR-1910-5p 1 0 0
chr8:144084722|144085115 hsa-miR-2276-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6895-3p 1 0 0
chr8:144084722|144085115 hsa-miR-501-5p 0 1 0
chr8:144084722|144085115 hsa-miR-7151-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6886-3p 1 0 0
chr8:144084722|144085115 hsa-miR-5088-3p 1 0 0
chr8:144084722|144085115 hsa-miR-502-5p 0 1 0
chr8:144084722|144085115 hsa-miR-518c-5p 0 1 0
chr8:144084722|144085115 hsa-miR-624-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6851-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6779-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6838-3p 1 0 0
chr8:144084722|144085115 hsa-miR-7158-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6808-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6812-5p 1 0 0
chr8:144084722|144085115 hsa-miR-1343-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6737-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6752-5p 1 1 0
chr8:144084722|144085115 hsa-miR-6756-5p 1 1 0
chr8:144084722|144085115 hsa-miR-6769a-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6803-5p 1 1 0
chr8:144084722|144085115 hsa-miR-6842-5p 0 1 0
chr8:144084722|144085115 hsa-miR-7110-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6751-5p 0 1 0
chr8:144084722|144085115 hsa-miR-320a-5p 1 0 0
chr8:144084722|144085115 hsa-miR-3620-5p 1 1 0
chr8:144084722|144085115 hsa-miR-5189-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6862-5p 0 1 0
chr8:144084722|144085115 hsa-miR-328-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6846-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6848-5p 1 1 0
chr8:144084722|144085115 hsa-miR-6885-5p 1 1 0
chr8:144084722|144085115 hsa-miR-4664-5p 0 1 0
chr8:144084722|144085115 hsa-miR-4665-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6855-5p 1 0 0
chr8:144084722|144085115 hsa-miR-6877-3p 1 1 0
chr8:144084722|144085115 hsa-miR-2682-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6791-5p 1 0 0
chr8:144084722|144085115 hsa-miR-4757-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6805-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6829-3p 1 0 0
chr8:144084722|144085115 hsa-miR-4723-3p 0 1 0
chr8:144084722|144085115 hsa-miR-6819-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6884-5p 0 1 0
chr8:144084722|144085115 hsa-miR-6744-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6783-3p 1 1 0
chr8:144084722|144085115 hsa-miR-6781-3p 1 0 0
chr8:144084722|144085115 hsa-miR-6843-3p 1 1 0
chr8:144084722|144085115 hsa-miR-3121-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:144084722|144085115
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MARGRGYLETKDQEQEADSGHVEADGDEAGEAGEQVEEEGLVQALQEVVELAEHALQS
Nucleotide Sequence ATGGCAAGGGGCAGAGGATATCTTGAGACCAAGGACCAGGAGCAAGAAGCCGACAGCGGGCATGTAGAGGCCGATGGAGACGAAGCGGGAGAGGCCGGGGAGCAAGTAGAGGAAGAAGGACTGGTGCAGGCGCTCCAGGAGGTGGTTGAGCTTGCGGAACATGCCCTCCAAAGC
CircID chr8:144084722|144085115
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MQLHPQFQSVAQSRTPTRGVTGSAQRGTQGSPPYPTPHQDGRLSPA
Nucleotide Sequence ATGCAGCTGCATCCACAGTTCCAGAGCGTAGCCCAATCAAGGACCCCAACAAGAGGTGTAACGGGATCTGCCCAGAGGGGGACCCAGGGCTCACCCCCGTACCCCACCCCCCATCAGGATGGAAGACTCTCCCCAGCCTAG
CircID chr8:144084722|144085115
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MVTGRWQGAEDILRPRTRSKKPTAGM
Nucleotide Sequence CTGGTCACAGGTAGATGGCAAGGGGCAGAGGATATCTTGAGACCAAGGACCAGGAGCAAGAAGCCGACAGCGGGCATGTAG
CircID chr8:144084722|144085115
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MPRGGPRAHPRTPPPIRMEDSPQPRVEETGGWSQVDGKGQRIS
Nucleotide Sequence CTGCCCAGAGGGGGACCCAGGGCTCACCCCCGTACCCCACCCCCCATCAGGATGGAAGACTCTCCCCAGCCTAGAGTTGAGGAGACTGGAGGCTGGTCACAGGTAGATGGCAAGGGGCAGAGGATATCTTGA
CircID chr8:144084722|144085115
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MPSTCDQPPVSSTLGWGESSILMGGGVRG
Nucleotide Sequence TTGCCATCTACCTGTGACCAGCCTCCAGTCTCCTCAACTCTAGGCTGGGGAGAGTCTTCCATCCTGATGGGGGGTGGGGTACGGGGGTGA
CircID chr8:144084722|144085115
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MGYALELWMQLHEAGMGLEEPGGAPGP
Nucleotide Sequence TTGGGCTACGCTCTGGAACTGTGGATGCAGCTGCATGAGGCTGGAATGGGCCTTGAGGAGCCCGGGGGTGCCCCTGGCCCC
CircID chr8:144084722|144085115
ORF Type ORF7
Protein Length 68
Nucleotide Length 207
Protein Sequence MEGMFRKLNHLLERLHQSFFLYLLPGLSRFVSIGLYMPAVGFLLLVLGLKISSAPCHLPVTSLQSPQL
Nucleotide Sequence TTGGAGGGCATGTTCCGCAAGCTCAACCACCTCCTGGAGCGCCTGCACCAGTCCTTCTTCCTCTACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCTCTACATGCCCGCTGTCGGCTTCTTGCTCCTGGTCCTTGGTCTCAAGATATCCTCTGCCCCTTGCCATCTACCTGTGACCAGCCTCCAGTCTCCTCAACTCTAG
CircID chr8:144084722|144085115
ORF Type ORF8
Protein Length 45
Nucleotide Length 138
Protein Sequence MGRVFHPDGGWGTGVSPGSPSGQIPLHLLLGSLIGLRSGTVDAAA
Nucleotide Sequence CTGGGGAGAGTCTTCCATCCTGATGGGGGGTGGGGTACGGGGGTGAGCCCTGGGTCCCCCTCTGGGCAGATCCCGTTACACCTCTTGTTGGGGTCCTTGATTGGGCTACGCTCTGGAACTGTGGATGCAGCTGCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab