CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144453808|144453934
Strand +
CircType exon
Host Gene ENSG00000187954.11;
Algorism CIRI2;
Sequence CCAGGATAAATGGCCTTTCTGAAGGCCCAGAGAGCATGCCTGCCCCAGTGTGGGAGCTGCATCCGCTCCCCACCTGACAGTGATGGCCAAGAGCCCAGTGTTCCTGGAGGGCTCCCAAACTCTGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144453808|144453934 hsa-miR-198 0 1 1
chr8:144453808|144453934 hsa-miR-141-5p 0 0 1
chr8:144453808|144453934 hsa-miR-141-3p 0 0 1
chr8:144453808|144453934 hsa-miR-200a-5p 0 0 1
chr8:144453808|144453934 hsa-miR-200a-3p 0 0 1
chr8:144453808|144453934 hsa-miR-326 0 1 1
chr8:144453808|144453934 hsa-miR-588 0 0 1
chr8:144453808|144453934 hsa-miR-612 1 0 1
chr8:144453808|144453934 hsa-miR-1301-5p 0 0 1
chr8:144453808|144453934 hsa-miR-1301-3p 0 0 1
chr8:144453808|144453934 hsa-miR-665 0 0 1
chr8:144453808|144453934 hsa-miR-873-5p 0 0 1
chr8:144453808|144453934 hsa-miR-873-3p 0 0 1
chr8:144453808|144453934 hsa-miR-920 0 0 1
chr8:144453808|144453934 hsa-miR-939-5p 0 0 1
chr8:144453808|144453934 hsa-miR-939-3p 0 0 1
chr8:144453808|144453934 hsa-miR-1208 0 0 1
chr8:144453808|144453934 hsa-miR-125a-3p 0 0 1
chr8:144453808|144453934 hsa-miR-491-5p 0 0 1
chr8:144453808|144453934 hsa-miR-486-3p 0 0 1
chr8:144453808|144453934 hsa-miR-532-3p 0 1 1
chr8:144453808|144453934 hsa-miR-525-5p 0 0 1
chr8:144453808|144453934 hsa-miR-188-3p 0 0 1
chr8:144453808|144453934 hsa-miR-520a-5p 0 1 1
chr8:144453808|144453934 hsa-miR-330-5p 0 1 1
chr8:144453808|144453934 hsa-miR-1233 0 0 1
chr8:144453808|144453934 hsa-miR-1285 0 0 1
chr8:144453808|144453934 hsa-miR-637 1 0 0
chr8:144453808|144453934 hsa-miR-760 1 0 0
chr8:144453808|144453934 hsa-miR-3196 1 0 0
chr8:144453808|144453934 hsa-miR-4736 1 0 0
chr8:144453808|144453934 hsa-miR-5787 1 0 0
chr8:144453808|144453934 hsa-miR-6090 0 1 0
chr8:144453808|144453934 hsa-miR-8089 1 0 0
chr8:144453808|144453934 hsa-miR-12120 0 1 0
chr8:144453808|144453934 hsa-miR-92a-2-5p 0 1 0
chr8:144453808|144453934 hsa-miR-15a-3p 0 1 0
chr8:144453808|144453934 hsa-miR-7155-5p 1 0 0
chr8:144453808|144453934 hsa-miR-6727-5p 1 0 0
chr8:144453808|144453934 hsa-miR-6806-5p 1 0 0
chr8:144453808|144453934 hsa-miR-4677-5p 0 1 0
chr8:144453808|144453934 hsa-miR-3180-3p 1 0 0
chr8:144453808|144453934 hsa-miR-185-3p 1 0 0
chr8:144453808|144453934 hsa-miR-6757-3p 0 1 0
chr8:144453808|144453934 hsa-miR-488-3p 0 1 0
chr8:144453808|144453934 hsa-miR-887-5p 0 1 0
chr8:144453808|144453934 hsa-miR-6768-3p 0 1 0
chr8:144453808|144453934 hsa-miR-4763-3p 1 0 0
chr8:144453808|144453934 hsa-miR-6816-5p 1 1 0
chr8:144453808|144453934 hsa-miR-1343-5p 1 1 0
chr8:144453808|144453934 hsa-miR-6743-5p 1 0 0
chr8:144453808|144453934 hsa-miR-6763-5p 0 1 0
chr8:144453808|144453934 hsa-miR-7111-5p 1 0 0
chr8:144453808|144453934 hsa-miR-6791-5p 1 0 0
chr8:144453808|144453934 hsa-miR-5581-5p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:144453808|144453934
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MAFLKAQRACLPQCGSCIRSPPDSDGQEPSVPGGLPNSG
Nucleotide Sequence ATGGCCTTTCTGAAGGCCCAGAGAGCATGCCTGCCCCAGTGTGGGAGCTGCATCCGCTCCCCACCTGACAGTGATGGCCAAGAGCCCAGTGTTCCTGGAGGGCTCCCAAACTCTGGA
CircID chr8:144453808|144453934
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MGALQEHWALGHHCQVGSGCSSHTGAGMLSGPSERPFIL
Nucleotide Sequence TTGGGAGCCCTCCAGGAACACTGGGCTCTTGGCCATCACTGTCAGGTGGGGAGCGGATGCAGCTCCCACACTGGGGCAGGCATGCTCTCTGGGCCTTCAGAAAGGCCATTTATCCTG
CircID chr8:144453808|144453934
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MAITVRWGADAAPTLGQACSLGLQKGHLSW
Nucleotide Sequence TTGGCCATCACTGTCAGGTGGGGAGCGGATGCAGCTCCCACACTGGGGCAGGCATGCTCTCTGGGCCTTCAGAAAGGCCATTTATCCTGG
CircID chr8:144453808|144453934
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MGSWPSLSGGERMQLPHWGRHALWAFRKAIYP
Nucleotide Sequence CTGGGCTCTTGGCCATCACTGTCAGGTGGGGAGCGGATGCAGCTCCCACACTGGGGCAGGCATGCTCTCTGGGCCTTCAGAAAGGCCATTTATCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab