CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144512544|144512880
Strand -
CircType exon
Host Gene ENSG00000160957.11;
Algorism CIRI2;
Sequence ACAGCCAAAGGGGGACACCTGTGGGCCAGGGCCTGGAGCTGGGCAGGGCCCCCAGGGCAGTTCAGACGGCAATGGGTATAGGTGGTCGCCAGCAGCTCCAGCCAGTGGTGTGGGTGCAGCTCCAGGTAGCACAGCAAAGTCTCGATGGCTGGGGGCAGAGCAGGGCTCAGCGGACGCGGGGACAGCCCCTCCACACCCCTGTGGCTTACCCCAGGTTCCTCACCCTCCTCCGGCATGTCCAAAGCCTGTACGGTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144512544|144512880 hsa-miR-552-5p 0 0 1
chr8:144512544|144512880 hsa-miR-552-3p 0 0 1
chr8:144512544|144512880 hsa-miR-555 0 0 1
chr8:144512544|144512880 hsa-miR-558 0 1 1
chr8:144512544|144512880 hsa-miR-619-5p 0 0 1
chr8:144512544|144512880 hsa-miR-619-3p 0 0 1
chr8:144512544|144512880 hsa-miR-637 1 1 1
chr8:144512544|144512880 hsa-miR-647 0 0 1
chr8:144512544|144512880 hsa-miR-660-5p 0 0 1
chr8:144512544|144512880 hsa-miR-660-3p 0 0 1
chr8:144512544|144512880 hsa-miR-765 0 0 1
chr8:144512544|144512880 hsa-miR-874-5p 0 0 1
chr8:144512544|144512880 hsa-miR-874-3p 0 0 1
chr8:144512544|144512880 hsa-miR-892b 0 0 1
chr8:144512544|144512880 hsa-miR-1291 0 1 1
chr8:144512544|144512880 hsa-miR-1225-3p 1 0 1
chr8:144512544|144512880 hsa-miR-146b-3p 0 0 1
chr8:144512544|144512880 hsa-miR-490-3p 0 1 1
chr8:144512544|144512880 hsa-miR-423-5p 0 0 1
chr8:144512544|144512880 hsa-miR-361-3p 0 1 1
chr8:144512544|144512880 hsa-miR-324-3p 0 0 1
chr8:144512544|144512880 hsa-miR-1233 0 0 1
chr8:144512544|144512880 hsa-miR-220c 0 0 1
chr8:144512544|144512880 hsa-miR-1273 0 0 1
chr8:144512544|144512880 hsa-miR-663a 1 0 0
chr8:144512544|144512880 hsa-miR-1471 1 1 0
chr8:144512544|144512880 hsa-miR-1913 1 0 0
chr8:144512544|144512880 hsa-miR-3147 1 0 0
chr8:144512544|144512880 hsa-miR-4253 1 0 0
chr8:144512544|144512880 hsa-miR-4254 0 1 0
chr8:144512544|144512880 hsa-miR-4292 0 1 0
chr8:144512544|144512880 hsa-miR-3652 1 1 0
chr8:144512544|144512880 hsa-miR-3657 0 1 0
chr8:144512544|144512880 hsa-miR-3911 0 1 0
chr8:144512544|144512880 hsa-miR-3943 1 0 0
chr8:144512544|144512880 hsa-miR-3135b 1 0 0
chr8:144512544|144512880 hsa-miR-4539 0 1 0
chr8:144512544|144512880 hsa-miR-4651 1 0 0
chr8:144512544|144512880 hsa-miR-4663 0 1 0
chr8:144512544|144512880 hsa-miR-4741 0 1 0
chr8:144512544|144512880 hsa-miR-5572 1 0 0
chr8:144512544|144512880 hsa-miR-5691 0 1 0
chr8:144512544|144512880 hsa-miR-6071 1 0 0
chr8:144512544|144512880 hsa-miR-7974 1 0 0
chr8:144512544|144512880 hsa-miR-8089 1 0 0
chr8:144512544|144512880 hsa-miR-12113 0 1 0
chr8:144512544|144512880 hsa-miR-150-3p 1 0 0
chr8:144512544|144512880 hsa-miR-370-3p 1 0 0
chr8:144512544|144512880 hsa-miR-18a-3p 0 1 0
chr8:144512544|144512880 hsa-miR-3194-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6747-5p 0 1 0
chr8:144512544|144512880 hsa-miR-7106-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6825-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6894-5p 1 0 0
chr8:144512544|144512880 hsa-miR-1233-3p 1 1 0
chr8:144512544|144512880 hsa-miR-486-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6515-5p 1 0 0
chr8:144512544|144512880 hsa-miR-7847-3p 1 0 0
chr8:144512544|144512880 hsa-miR-3928-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6842-3p 0 1 0
chr8:144512544|144512880 hsa-miR-432-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6742-5p 1 0 0
chr8:144512544|144512880 hsa-miR-185-3p 1 1 0
chr8:144512544|144512880 hsa-miR-6798-5p 1 0 0
chr8:144512544|144512880 hsa-miR-3130-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6881-5p 0 1 0
chr8:144512544|144512880 hsa-miR-6874-5p 0 1 0
chr8:144512544|144512880 hsa-miR-6728-3p 1 1 0
chr8:144512544|144512880 hsa-miR-1343-3p 1 0 0
chr8:144512544|144512880 hsa-miR-6786-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6852-5p 0 1 0
chr8:144512544|144512880 hsa-miR-6763-3p 1 0 0
chr8:144512544|144512880 hsa-miR-5001-3p 0 1 0
chr8:144512544|144512880 hsa-miR-7113-3p 1 0 0
chr8:144512544|144512880 hsa-miR-149-3p 1 0 0
chr8:144512544|144512880 hsa-miR-6736-3p 0 1 0
chr8:144512544|144512880 hsa-miR-339-5p 1 0 0
chr8:144512544|144512880 hsa-miR-7850-5p 0 1 0
chr8:144512544|144512880 hsa-miR-6886-3p 1 0 0
chr8:144512544|144512880 hsa-miR-3173-5p 0 1 0
chr8:144512544|144512880 hsa-miR-6779-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6769b-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6778-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6812-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6816-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6870-5p 1 0 0
chr8:144512544|144512880 hsa-miR-5001-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6726-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6752-5p 1 1 0
chr8:144512544|144512880 hsa-miR-6756-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6803-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6851-5p 1 0 0
chr8:144512544|144512880 hsa-miR-1249-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6751-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6774-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6779-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6797-5p 1 0 0
chr8:144512544|144512880 hsa-miR-7111-5p 1 0 0
chr8:144512544|144512880 hsa-miR-4728-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6780b-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6862-5p 1 1 0
chr8:144512544|144512880 hsa-miR-4649-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6846-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6848-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6858-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6883-5p 1 0 0
chr8:144512544|144512880 hsa-miR-10396a-3p 1 0 0
chr8:144512544|144512880 hsa-miR-10396b-3p 1 0 0
chr8:144512544|144512880 hsa-miR-6799-3p 1 1 0
chr8:144512544|144512880 hsa-miR-5008-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6736-5p 1 0 0
chr8:144512544|144512880 hsa-miR-7151-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6891-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6785-5p 1 0 0
chr8:144512544|144512880 hsa-miR-6791-5p 1 1 0
chr8:144512544|144512880 hsa-miR-193b-3p 1 0 0
chr8:144512544|144512880 hsa-miR-6805-3p 1 1 0
chr8:144512544|144512880 hsa-miR-6775-3p 1 1 0
chr8:144512544|144512880 hsa-miR-6751-3p 0 1 0
chr8:144512544|144512880 hsa-miR-6859-5p 0 1 0
chr8:144512544|144512880 hsa-miR-4691-5p 1 0 0
chr8:144512544|144512880 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:144512544|144512880
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MAGGRAGLSGRGDSPSTPLWLTPGSSPSSGMSKACTV
Nucleotide Sequence ATGGCTGGGGGCAGAGCAGGGCTCAGCGGACGCGGGGACAGCCCCTCCACACCCCTGTGGCTTACCCCAGGTTCCTCACCCTCCTCCGGCATGTCCAAAGCCTGTACGGTA
CircID chr8:144512544|144512880
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MGAEQGSADAGTAPPHPCGLPQVPHPPPACPKPVR
Nucleotide Sequence CTGGGGGCAGAGCAGGGCTCAGCGGACGCGGGGACAGCCCCTCCACACCCCTGTGGCTTACCCCAGGTTCCTCACCCTCCTCCGGCATGTCCAAAGCCTGTACGGTAA
CircID chr8:144512544|144512880
ORF Type ORF3
Protein Length 75
Nucleotide Length 225
Protein Sequence MELGRAPRAVQTAMGIGGRQQLQPVVWVQLQVAQQSLDGWGQSRAQRTRGQPLHTPVAYPRFLTLLRHVQSLYGK
Nucleotide Sequence CTGGAGCTGGGCAGGGCCCCCAGGGCAGTTCAGACGGCAATGGGTATAGGTGGTCGCCAGCAGCTCCAGCCAGTGGTGTGGGTGCAGCTCCAGGTAGCACAGCAAAGTCTCGATGGCTGGGGGCAGAGCAGGGCTCAGCGGACGCGGGGACAGCCCCTCCACACCCCTGTGGCTTACCCCAGGTTCCTCACCCTCCTCCGGCATGTCCAAAGCCTGTACGGTAAG
CircID chr8:144512544|144512880
ORF Type ORF4
Protein Length 80
Nucleotide Length 240
Protein Sequence MDMPEEGEEPGVSHRGVEGLSPRPLSPALPPAIETLLCYLELHPHHWLELLATTYTHCRLNCPGGPAQLQALAHRCPPLA
Nucleotide Sequence TTGGACATGCCGGAGGAGGGTGAGGAACCTGGGGTAAGCCACAGGGGTGTGGAGGGGCTGTCCCCGCGTCCGCTGAGCCCTGCTCTGCCCCCAGCCATCGAGACTTTGCTGTGCTACCTGGAGCTGCACCCACACCACTGGCTGGAGCTGCTGGCGACCACCTATACCCATTGCCGTCTGAACTGCCCTGGGGGCCCTGCCCAGCTCCAGGCCCTGGCCCACAGGTGTCCCCCTTTGGCT
CircID chr8:144512544|144512880
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MLCPQPSRLCCATWSCTHTTGWSCWRPPIPIAV
Nucleotide Sequence CTGCTCTGCCCCCAGCCATCGAGACTTTGCTGTGCTACCTGGAGCTGCACCCACACCACTGGCTGGAGCTGCTGGCGACCACCTATACCCATTGCCGTCTGA
CircID chr8:144512544|144512880
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MAGAAGDHLYPLPSELPWGPCPAPGPGPQVSPFGC
Nucleotide Sequence CTGGCTGGAGCTGCTGGCGACCACCTATACCCATTGCCGTCTGAACTGCCCTGGGGGCCCTGCCCAGCTCCAGGCCCTGGCCCACAGGTGTCCCCCTTTGGCTGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab