CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144515027|144515389
Strand -
CircType exon
Host Gene ENSG00000160957.11;
Algorism CIRI2;
Sequence AGGGACTTGCCGGCACCTGTAGGCAGCACCAGCAGCGTGGAGATGCCTGGATGGGGCGGGAGTCAGCAGCAGGGTTCTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGACTGCACGCTCCTGCCCAGGGCGAAAGGCTTGGTGCCCCAGCTGCTCCAGGGCCTGGAACACCTCAGCCGGCGTCTCTGCAGACACAGATGTTGATCACCATGACTTGAGTCACCCCAACCCCTCAGTGAAGGCTCTGGGCCAGAAGCTGACTGCTCACCTGCCAACTGCCCTGAGGGCCCCAGGGAGTAGAGTGGCAGCACGGTGGGGTCCAGGCTGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144515027|144515389 hsa-miR-370-5p 0 0 1
chr8:144515027|144515389 hsa-miR-370-3p 0 0 1
chr8:144515027|144515389 hsa-miR-345-5p 0 0 1
chr8:144515027|144515389 hsa-miR-345-3p 0 0 1
chr8:144515027|144515389 hsa-miR-346 0 0 1
chr8:144515027|144515389 hsa-miR-552-5p 0 0 1
chr8:144515027|144515389 hsa-miR-552-3p 0 0 1
chr8:144515027|144515389 hsa-miR-604 0 0 1
chr8:144515027|144515389 hsa-miR-608 1 0 1
chr8:144515027|144515389 hsa-miR-612 1 0 1
chr8:144515027|144515389 hsa-miR-632 0 0 1
chr8:144515027|144515389 hsa-miR-646 0 0 1
chr8:144515027|144515389 hsa-miR-647 0 0 1
chr8:144515027|144515389 hsa-miR-298 0 0 1
chr8:144515027|144515389 hsa-miR-1231 0 0 1
chr8:144515027|144515389 hsa-miR-1205 0 0 1
chr8:144515027|144515389 hsa-miR-1291 0 0 1
chr8:144515027|144515389 hsa-miR-1249-5p 0 0 1
chr8:144515027|144515389 hsa-miR-1249-3p 0 0 1
chr8:144515027|144515389 hsa-miR-1266-5p 0 0 1
chr8:144515027|144515389 hsa-miR-1266-3p 0 0 1
chr8:144515027|144515389 hsa-miR-125a-3p 0 0 1
chr8:144515027|144515389 hsa-miR-139-3p 1 0 1
chr8:144515027|144515389 hsa-miR-127-3p 1 0 1
chr8:144515027|144515389 hsa-miR-486-3p 0 0 1
chr8:144515027|144515389 hsa-miR-485-5p 0 0 1
chr8:144515027|144515389 hsa-miR-1184 0 0 1
chr8:144515027|144515389 hsa-miR-423-5p 0 0 1
chr8:144515027|144515389 hsa-miR-1207-3p 0 0 1
chr8:144515027|144515389 hsa-miR-628-5p 0 0 1
chr8:144515027|144515389 hsa-miR-1207-5p 1 0 1
chr8:144515027|144515389 hsa-miR-342-5p 1 0 1
chr8:144515027|144515389 hsa-miR-1280 0 0 1
chr8:144515027|144515389 hsa-miR-138 0 0 1
chr8:144515027|144515389 hsa-miR-1285 0 0 1
chr8:144515027|144515389 hsa-miR-1254 0 0 1
chr8:144515027|144515389 hsa-miR-637 1 0 0
chr8:144515027|144515389 hsa-miR-663a 1 0 0
chr8:144515027|144515389 hsa-miR-762 1 0 0
chr8:144515027|144515389 hsa-miR-1268a 1 0 0
chr8:144515027|144515389 hsa-miR-1538 1 0 0
chr8:144515027|144515389 hsa-miR-1268b 1 0 0
chr8:144515027|144515389 hsa-miR-4440 1 0 0
chr8:144515027|144515389 hsa-miR-3135b 1 0 0
chr8:144515027|144515389 hsa-miR-4505 1 0 0
chr8:144515027|144515389 hsa-miR-4507 1 0 0
chr8:144515027|144515389 hsa-miR-1587 1 0 0
chr8:144515027|144515389 hsa-miR-4651 1 0 0
chr8:144515027|144515389 hsa-miR-4656 1 0 0
chr8:144515027|144515389 hsa-miR-4657 1 0 0
chr8:144515027|144515389 hsa-miR-4673 1 0 0
chr8:144515027|144515389 hsa-miR-4754 1 0 0
chr8:144515027|144515389 hsa-miR-5194 1 0 0
chr8:144515027|144515389 hsa-miR-5572 1 0 0
chr8:144515027|144515389 hsa-miR-5787 1 0 0
chr8:144515027|144515389 hsa-miR-6069 1 0 0
chr8:144515027|144515389 hsa-miR-6075 1 0 0
chr8:144515027|144515389 hsa-miR-6081 1 0 0
chr8:144515027|144515389 hsa-miR-6085 1 0 0
chr8:144515027|144515389 hsa-miR-6860 1 0 0
chr8:144515027|144515389 hsa-miR-7704 1 0 0
chr8:144515027|144515389 hsa-miR-8089 1 0 0
chr8:144515027|144515389 hsa-miR-12119 1 0 0
chr8:144515027|144515389 hsa-miR-150-3p 1 0 0
chr8:144515027|144515389 hsa-miR-4747-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6765-5p 1 0 0
chr8:144515027|144515389 hsa-miR-149-5p 1 0 0
chr8:144515027|144515389 hsa-miR-3150a-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6089 1 0 0
chr8:144515027|144515389 hsa-miR-7160-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6727-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6796-5p 1 0 0
chr8:144515027|144515389 hsa-miR-2467-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6782-5p 1 0 0
chr8:144515027|144515389 hsa-miR-5008-5p 1 0 0
chr8:144515027|144515389 hsa-miR-5006-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6850-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6852-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6835-5p 1 0 0
chr8:144515027|144515389 hsa-miR-3944-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6753-5p 1 0 0
chr8:144515027|144515389 hsa-miR-296-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6834-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6501-5p 1 0 0
chr8:144515027|144515389 hsa-miR-574-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6743-3p 1 0 0
chr8:144515027|144515389 hsa-miR-4758-3p 1 0 0
chr8:144515027|144515389 hsa-miR-208a-5p 1 0 0
chr8:144515027|144515389 hsa-miR-10400-5p 1 0 0
chr8:144515027|144515389 hsa-miR-4763-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6812-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6816-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6737-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6754-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6756-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6803-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6813-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6819-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6722-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6751-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6774-5p 1 0 0
chr8:144515027|144515389 hsa-miR-3620-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6836-5p 1 0 0
chr8:144515027|144515389 hsa-miR-10396b-5p 1 0 0
chr8:144515027|144515389 hsa-miR-4685-5p 1 0 0
chr8:144515027|144515389 hsa-miR-4726-5p 1 0 0
chr8:144515027|144515389 hsa-miR-4745-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6848-5p 1 0 0
chr8:144515027|144515389 hsa-miR-10396a-3p 1 0 0
chr8:144515027|144515389 hsa-miR-3940-5p 1 0 0
chr8:144515027|144515389 hsa-miR-1271-3p 1 0 0
chr8:144515027|144515389 hsa-miR-6790-5p 1 0 0
chr8:144515027|144515389 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:144515027|144515389
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MPAPVGSTSSVEMPGWGGSQQQGSAAWPQPSLSPGSHAHQTGSA
Nucleotide Sequence TTGCCGGCACCTGTAGGCAGCACCAGCAGCGTGGAGATGCCTGGATGGGGCGGGAGTCAGCAGCAGGGTTCTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGA
CircID chr8:144515027|144515389
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MHAPAQGERLGAPAAPGPGTPQPASLQTQMLITMT
Nucleotide Sequence CTGCACGCTCCTGCCCAGGGCGAAAGGCTTGGTGCCCCAGCTGCTCCAGGGCCTGGAACACCTCAGCCGGCGTCTCTGCAGACACAGATGTTGATCACCATGACTTGA
CircID chr8:144515027|144515389
ORF Type ORF3
Protein Length 62
Nucleotide Length 189
Protein Sequence MDGAGVSSRVLQPGLSPASALAATLTRQDPHDCTLLPRAKGLVPQLLQGLEHLSRRLCRHRC
Nucleotide Sequence CTGGATGGGGCGGGAGTCAGCAGCAGGGTTCTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGACTGCACGCTCCTGCCCAGGGCGAAAGGCTTGGTGCCCCAGCTGCTCCAGGGCCTGGAACACCTCAGCCGGCGTCTCTGCAGACACAGATGTTGA
CircID chr8:144515027|144515389
ORF Type ORF4
Protein Length 104
Nucleotide Length 312
Protein Sequence MGRESAAGFCSLASAQPQPWQPRSPDRIRMTARSCPGRKAWCPSCSRAWNTSAGVSADTDVDHHDLSHPNPSVKALGQKLTAHLPTALRAPGSRVAARWGPGWA
Nucleotide Sequence ATGGGGCGGGAGTCAGCAGCAGGGTTCTGCAGCCTGGCCTCAGCCCAGCCTCAGCCCTGGCAGCCACGCTCACCAGACAGGATCCGCATGACTGCACGCTCCTGCCCAGGGCGAAAGGCTTGGTGCCCCAGCTGCTCCAGGGCCTGGAACACCTCAGCCGGCGTCTCTGCAGACACAGATGTTGATCACCATGACTTGAGTCACCCCAACCCCTCAGTGAAGGCTCTGGGCCAGAAGCTGACTGCTCACCTGCCAACTGCCCTGAGGGCCCCAGGGAGTAGAGTGGCAGCACGGTGGGGTCCAGGCTGGGCA
CircID chr8:144515027|144515389
ORF Type ORF5
Protein Length 118
Nucleotide Length 354
Protein Sequence MDPTVLPLYSLGPSGQLAGEQSASGPEPSLRGWGDSSHGDQHLCLQRRRLRCSRPWSSWGTKPFALGRSVQSCGSCLVSVAARAEAGLRPGCRTLLLTPAPSRHLHAAGAAYRCRQVP
Nucleotide Sequence CTGGACCCCACCGTGCTGCCACTCTACTCCCTGGGGCCCTCAGGGCAGTTGGCAGGTGAGCAGTCAGCTTCTGGCCCAGAGCCTTCACTGAGGGGTTGGGGTGACTCAAGTCATGGTGATCAACATCTGTGTCTGCAGAGACGCCGGCTGAGGTGTTCCAGGCCCTGGAGCAGCTGGGGCACCAAGCCTTTCGCCCTGGGCAGGAGCGTGCAGTCATGCGGATCCTGTCTGGTGAGCGTGGCTGCCAGGGCTGAGGCTGGGCTGAGGCCAGGCTGCAGAACCCTGCTGCTGACTCCCGCCCCATCCAGGCATCTCCACGCTGCTGGTGCTGCCTACAGGTGCCGGCAAGTCCCT
CircID chr8:144515027|144515389
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MEQLGHQAFRPGQERAVMRILSGERGCQG
Nucleotide Sequence CTGGAGCAGCTGGGGCACCAAGCCTTTCGCCCTGGGCAGGAGCGTGCAGTCATGCGGATCCTGTCTGGTGAGCGTGGCTGCCAGGGCTGA
CircID chr8:144515027|144515389
ORF Type ORF7
Protein Length 27
Nucleotide Length 81
Protein Sequence MQNPAADSRPIQASPRCWCCLQVPASP
Nucleotide Sequence CTGCAGAACCCTGCTGCTGACTCCCGCCCCATCCAGGCATCTCCACGCTGCTGGTGCTGCCTACAGGTGCCGGCAAGTCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab