CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144850256|144850430
Strand +
CircType exon
Host Gene ENSG00000170619.9;
Algorism CIRI2;
Sequence CTCACACCCTCCCCTTCCCTGTACATTTGTCTTTGGTGCTGGACGTGGCCATGTGAGGCCAGGTTGAGGCCCTTTGTAGACAACATACAGTTGCTCAGCCTGGCCCCATGTAGCCAGGTGCTTTTGTAGATCTTGTGTTTTAGGTTGGGCATTTTCACTCTTCTGCCTTAAATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144850256|144850430 hsa-miR-29a-5p 0 0 1
chr8:144850256|144850430 hsa-miR-29a-3p 0 0 1
chr8:144850256|144850430 hsa-miR-221-5p 0 0 1
chr8:144850256|144850430 hsa-miR-221-3p 0 0 1
chr8:144850256|144850430 hsa-miR-222-5p 0 0 1
chr8:144850256|144850430 hsa-miR-222-3p 0 0 1
chr8:144850256|144850430 hsa-miR-29c-5p 0 0 1
chr8:144850256|144850430 hsa-miR-29c-3p 0 0 1
chr8:144850256|144850430 hsa-miR-506-5p 0 0 1
chr8:144850256|144850430 hsa-miR-506-3p 0 0 1
chr8:144850256|144850430 hsa-miR-567 0 0 1
chr8:144850256|144850430 hsa-miR-588 0 0 1
chr8:144850256|144850430 hsa-miR-298 0 1 1
chr8:144850256|144850430 hsa-miR-934 0 0 1
chr8:144850256|144850430 hsa-miR-297 0 0 1
chr8:144850256|144850430 hsa-miR-1283 0 1 1
chr8:144850256|144850430 hsa-miR-490-3p 0 0 1
chr8:144850256|144850430 hsa-miR-524-5p 0 1 1
chr8:144850256|144850430 hsa-miR-338-3p 0 0 1
chr8:144850256|144850430 hsa-miR-520d-5p 0 1 1
chr8:144850256|144850430 hsa-miR-124 0 0 1
chr8:144850256|144850430 hsa-miR-29b 0 0 1
chr8:144850256|144850430 hsa-miR-365 0 0 1
chr8:144850256|144850430 hsa-miR-198 1 0 0
chr8:144850256|144850430 hsa-miR-3138 1 0 0
chr8:144850256|144850430 hsa-miR-4478 0 1 0
chr8:144850256|144850430 hsa-miR-4512 0 1 0
chr8:144850256|144850430 hsa-miR-4739 1 0 0
chr8:144850256|144850430 hsa-miR-4801 0 1 0
chr8:144850256|144850430 hsa-miR-6840-3p 1 0 0
chr8:144850256|144850430 hsa-miR-6825-5p 0 1 0
chr8:144850256|144850430 hsa-miR-1227-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6890-5p 0 1 0
chr8:144850256|144850430 hsa-miR-4655-5p 1 0 0
chr8:144850256|144850430 hsa-miR-770-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6768-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6760-5p 1 1 0
chr8:144850256|144850430 hsa-miR-6765-3p 0 1 0
chr8:144850256|144850430 hsa-miR-4640-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6877-5p 1 0 0
chr8:144850256|144850430 hsa-miR-3065-3p 0 1 0
chr8:144850256|144850430 hsa-miR-330-3p 0 1 0
chr8:144850256|144850430 hsa-miR-5589-3p 0 1 0
chr8:144850256|144850430 hsa-miR-3675-5p 0 1 0
chr8:144850256|144850430 hsa-miR-4714-3p 0 1 0
chr8:144850256|144850430 hsa-miR-1207-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6797-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6879-5p 0 1 0
chr8:144850256|144850430 hsa-miR-5196-5p 0 1 0
chr8:144850256|144850430 hsa-miR-4726-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6735-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6883-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6845-5p 0 1 0
chr8:144850256|144850430 hsa-miR-1910-3p 0 1 0
chr8:144850256|144850430 hsa-miR-6511a-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6785-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6762-5p 0 1 0
chr8:144850256|144850430 hsa-miR-6837-5p 1 0 0
chr8:144850256|144850430 hsa-miR-6884-5p 0 1 0
chr8:144850256|144850430 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:144850256|144850430
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MYICLWCWTWPCEARLRPFVDNIQLLSLAPCSQVLL
Nucleotide Sequence CTGTACATTTGTCTTTGGTGCTGGACGTGGCCATGTGAGGCCAGGTTGAGGCCCTTTGTAGACAACATACAGTTGCTCAGCCTGGCCCCATGTAGCCAGGTGCTTTTGTAG
CircID chr8:144850256|144850430
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MATWGQAEQLYVVYKGPQPGLTWPRPAPKTNVQGRGGCE
Nucleotide Sequence CTGGCTACATGGGGCCAGGCTGAGCAACTGTATGTTGTCTACAAAGGGCCTCAACCTGGCCTCACATGGCCACGTCCAGCACCAAAGACAAATGTACAGGGAAGGGGAGGGTGTGAG
CircID chr8:144850256|144850430
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MPNLKHKIYKSTWLHGARLSNCMLSTKGLNLASHGHVQHQRQMYREGEGV
Nucleotide Sequence ATGCCCAACCTAAAACACAAGATCTACAAAAGCACCTGGCTACATGGGGCCAGGCTGAGCAACTGTATGTTGTCTACAAAGGGCCTCAACCTGGCCTCACATGGCCACGTCCAGCACCAAAGACAAATGTACAGGGAAGGGGAGGGTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab