CircRNA Information

General Information
circRNA Basic Information
CircID chr8:144889617|144889975
Strand +
CircType exon
Host Gene ENSG00000196150.12;
Algorism CIRI2;
Sequence AGAAATGTGATGATGGAAACCTATGGGAATGTAGTCTCATTGGGTAAGCCACCTTAGCAGGCCTCGTCTATGTATCTGCGTATTGGACTGGGGTGGGGGCTTCTCAGGGTACGGGGCCTGGGACAGGCTGGTCCTGGAGGTTTGCTCTCATCACCTCTCTGGGTGCTCAGCTCCAGCAGAAGATCAGTCCTGTCCATTTTCATGTCCCCACAAGTGGCTTGGGCAGGGGGAGGGGGCTCTGTAAATGTTGTGTAAACAAAGACTTCCCTCCCCACGAGCAGGACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:144889617|144889975 hsa-miR-18a-5p 0 0 1
chr8:144889617|144889975 hsa-miR-18a-3p 0 0 1
chr8:144889617|144889975 hsa-miR-23a-5p 0 0 1
chr8:144889617|144889975 hsa-miR-23a-3p 0 0 1
chr8:144889617|144889975 hsa-miR-198 0 0 1
chr8:144889617|144889975 hsa-miR-10a-5p 0 0 1
chr8:144889617|144889975 hsa-miR-10a-3p 0 0 1
chr8:144889617|144889975 hsa-miR-10b-5p 0 0 1
chr8:144889617|144889975 hsa-miR-10b-3p 0 0 1
chr8:144889617|144889975 hsa-miR-181c-5p 0 0 1
chr8:144889617|144889975 hsa-miR-181c-3p 0 0 1
chr8:144889617|144889975 hsa-miR-23b-5p 0 0 1
chr8:144889617|144889975 hsa-miR-23b-3p 0 0 1
chr8:144889617|144889975 hsa-miR-376c-5p 0 0 1
chr8:144889617|144889975 hsa-miR-376c-3p 0 0 1
chr8:144889617|144889975 hsa-miR-370-5p 0 0 1
chr8:144889617|144889975 hsa-miR-370-3p 0 0 1
chr8:144889617|144889975 hsa-miR-18b-5p 0 0 1
chr8:144889617|144889975 hsa-miR-18b-3p 0 0 1
chr8:144889617|144889975 hsa-miR-484 0 0 1
chr8:144889617|144889975 hsa-miR-181d-5p 0 0 1
chr8:144889617|144889975 hsa-miR-181d-3p 0 0 1
chr8:144889617|144889975 hsa-miR-587 0 0 1
chr8:144889617|144889975 hsa-miR-1264 0 0 1
chr8:144889617|144889975 hsa-miR-766-5p 0 0 1
chr8:144889617|144889975 hsa-miR-766-3p 0 0 1
chr8:144889617|144889975 hsa-miR-665 0 0 1
chr8:144889617|144889975 hsa-miR-939-5p 0 0 1
chr8:144889617|144889975 hsa-miR-939-3p 0 0 1
chr8:144889617|144889975 hsa-miR-1287-5p 0 0 1
chr8:144889617|144889975 hsa-miR-1287-3p 0 0 1
chr8:144889617|144889975 hsa-miR-1253 0 0 1
chr8:144889617|144889975 hsa-miR-1225-3p 0 1 1
chr8:144889617|144889975 hsa-miR-491-5p 0 0 1
chr8:144889617|144889975 hsa-miR-1207-3p 0 0 1
chr8:144889617|144889975 hsa-miR-125a-5p 0 1 1
chr8:144889617|144889975 hsa-miR-455-3p 0 1 1
chr8:144889617|144889975 hsa-miR-125b 0 0 1
chr8:144889617|144889975 hsa-miR-181a 0 0 1
chr8:144889617|144889975 hsa-miR-181b 0 0 1
chr8:144889617|144889975 hsa-miR-1300 0 0 1
chr8:144889617|144889975 hsa-miR-711 0 1 0
chr8:144889617|144889975 hsa-miR-3143 0 1 0
chr8:144889617|144889975 hsa-miR-4313 1 0 0
chr8:144889617|144889975 hsa-miR-4319 0 1 0
chr8:144889617|144889975 hsa-miR-4323 1 0 0
chr8:144889617|144889975 hsa-miR-4324 0 1 0
chr8:144889617|144889975 hsa-miR-3943 0 1 0
chr8:144889617|144889975 hsa-miR-3135b 1 1 0
chr8:144889617|144889975 hsa-miR-4663 0 1 0
chr8:144889617|144889975 hsa-miR-8089 0 1 0
chr8:144889617|144889975 hsa-miR-6749-3p 0 1 0
chr8:144889617|144889975 hsa-miR-214-5p 0 1 0
chr8:144889617|144889975 hsa-miR-500b-3p 0 1 0
chr8:144889617|144889975 hsa-miR-4700-3p 0 1 0
chr8:144889617|144889975 hsa-miR-1233-3p 0 1 0
chr8:144889617|144889975 hsa-miR-224-5p 0 1 0
chr8:144889617|144889975 hsa-miR-486-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6799-5p 0 1 0
chr8:144889617|144889975 hsa-miR-3663-3p 0 1 0
chr8:144889617|144889975 hsa-miR-3192-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6875-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6849-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6796-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6874-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6810-5p 0 1 0
chr8:144889617|144889975 hsa-miR-532-3p 1 0 0
chr8:144889617|144889975 hsa-miR-4707-3p 1 0 0
chr8:144889617|144889975 hsa-miR-3944-3p 1 0 0
chr8:144889617|144889975 hsa-miR-4786-3p 1 0 0
chr8:144889617|144889975 hsa-miR-3667-3p 0 1 0
chr8:144889617|144889975 hsa-miR-3160-3p 0 1 0
chr8:144889617|144889975 hsa-miR-1266-3p 0 1 0
chr8:144889617|144889975 hsa-miR-4667-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6500-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6886-5p 1 0 0
chr8:144889617|144889975 hsa-miR-4740-5p 0 1 0
chr8:144889617|144889975 hsa-miR-4687-5p 0 1 0
chr8:144889617|144889975 hsa-miR-873-3p 1 0 0
chr8:144889617|144889975 hsa-miR-6887-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6793-3p 1 0 0
chr8:144889617|144889975 hsa-miR-6826-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6795-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6748-3p 0 1 0
chr8:144889617|144889975 hsa-miR-7152-5p 0 1 0
chr8:144889617|144889975 hsa-miR-4433b-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6838-3p 0 1 0
chr8:144889617|144889975 hsa-miR-5003-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6815-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6851-5p 1 0 0
chr8:144889617|144889975 hsa-miR-6797-5p 0 1 0
chr8:144889617|144889975 hsa-miR-3127-3p 0 1 0
chr8:144889617|144889975 hsa-miR-4685-3p 0 1 0
chr8:144889617|144889975 hsa-miR-4728-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6758-5p 0 1 0
chr8:144889617|144889975 hsa-miR-10398-3p 1 0 0
chr8:144889617|144889975 hsa-miR-6756-3p 0 1 0
chr8:144889617|144889975 hsa-miR-6801-3p 0 1 0
chr8:144889617|144889975 hsa-miR-10400-3p 1 0 0
chr8:144889617|144889975 hsa-miR-6837-5p 0 1 0
chr8:144889617|144889975 hsa-miR-6775-3p 1 0 0
chr8:144889617|144889975 hsa-miR-10392-3p 1 0 0
chr8:144889617|144889975 hsa-miR-3130-5p 1 0 0
chr8:144889617|144889975 hsa-miR-6764-5p 0 1 0
chr8:144889617|144889975 hsa-miR-4690-3p 1 0 0
chr8:144889617|144889975 hsa-miR-6864-3p 0 1 0
chr8:144889617|144889975 hsa-miR-1912-3p 0 1 0
chr8:144889617|144889975 hsa-miR-125b-5p 0 1 0
chr8:144889617|144889975 hsa-miR-4694-3p 0 1 0
chr8:144889617|144889975 hsa-miR-1277-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:144889617|144889975
ORF Type ORF1
Protein Length 61
Nucleotide Length 186
Protein Sequence MYLRIGLGWGLLRVRGLGQAGPGGLLSSPLWVLSSSRRSVLSIFMSPQVAWAGGGGSVNVV
Nucleotide Sequence ATGTATCTGCGTATTGGACTGGGGTGGGGGCTTCTCAGGGTACGGGGCCTGGGACAGGCTGGTCCTGGAGGTTTGCTCTCATCACCTCTCTGGGTGCTCAGCTCCAGCAGAAGATCAGTCCTGTCCATTTTCATGTCCCCACAAGTGGCTTGGGCAGGGGGAGGGGGCTCTGTAAATGTTGTGTAA
CircID chr8:144889617|144889975
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MDWGGGFSGYGAWDRLVLEVCSHHLSGCSAPAEDQSCPFSCPHKWLGQGEGAL
Nucleotide Sequence TTGGACTGGGGTGGGGGCTTCTCAGGGTACGGGGCCTGGGACAGGCTGGTCCTGGAGGTTTGCTCTCATCACCTCTCTGGGTGCTCAGCTCCAGCAGAAGATCAGTCCTGTCCATTTTCATGTCCCCACAAGTGGCTTGGGCAGGGGGAGGGGGCTCTGTAA
CircID chr8:144889617|144889975
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MLCKQRLPSPRAGLPGSKPDIISQLERGEDPWVLDRKG
Nucleotide Sequence ATGTTGTGTAAACAAAGACTTCCCTCCCCACGAGCAGGACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGG
CircID chr8:144889617|144889975
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MGAQLQQKISPVHFHVPTSGLGRGRGLCKCCVNKDFPPHEQDFQDPSLT
Nucleotide Sequence CTGGGTGCTCAGCTCCAGCAGAAGATCAGTCCTGTCCATTTTCATGTCCCCACAAGTGGCTTGGGCAGGGGGAGGGGGCTCTGTAAATGTTGTGTAAACAAAGACTTCCCTCCCCACGAGCAGGACTTCCAGGATCCAAGCCTGACATAA
CircID chr8:144889617|144889975
ORF Type ORF5
Protein Length 78
Nucleotide Length 237
Protein Sequence MEVLLVGREVFVYTTFTEPPPPAQATCGDMKMDRTDLLLELSTQRGDESKPPGPACPRPRTLRSPHPSPIRRYIDEAC
Nucleotide Sequence CTGGAAGTCCTGCTCGTGGGGAGGGAAGTCTTTGTTTACACAACATTTACAGAGCCCCCTCCCCCTGCCCAAGCCACTTGTGGGGACATGAAAATGGACAGGACTGATCTTCTGCTGGAGCTGAGCACCCAGAGAGGTGATGAGAGCAAACCTCCAGGACCAGCCTGTCCCAGGCCCCGTACCCTGAGAAGCCCCCACCCCAGTCCAATACGCAGATACATAGACGAGGCCTGCTAA
CircID chr8:144889617|144889975
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MGDYVRLGSWKSCSWGGKSLFTQHLQSPLPLPKPLVGT
Nucleotide Sequence CTGGGAGATTATGTCAGGCTTGGATCCTGGAAGTCCTGCTCGTGGGGAGGGAAGTCTTTGTTTACACAACATTTACAGAGCCCCCTCCCCCTGCCCAAGCCACTTGTGGGGACATGA
CircID chr8:144889617|144889975
ORF Type ORF7
Protein Length 55
Nucleotide Length 168
Protein Sequence MSRTQGSSPRSSWEIMSGLDPGSPARGEGSLCLHNIYRAPSPCPSHLWGHENGQD
Nucleotide Sequence CTGTCCAGGACCCAGGGATCTTCCCCTCGCTCCAGCTGGGAGATTATGTCAGGCTTGGATCCTGGAAGTCCTGCTCGTGGGGAGGGAAGTCTTTGTTTACACAACATTTACAGAGCCCCCTCCCCCTGCCCAAGCCACTTGTGGGGACATGAAAATGGACAGGACTGA
CircID chr8:144889617|144889975
ORF Type ORF8
Protein Length 29
Nucleotide Length 90
Protein Sequence MSQAPYPEKPPPQSNTQIHRRGLLRWLTQ
Nucleotide Sequence CTGTCCCAGGCCCCGTACCCTGAGAAGCCCCCACCCCAGTCCAATACGCAGATACATAGACGAGGCCTGCTAAGGTGGCTTACCCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab