CircRNA Information

General Information
circRNA Basic Information
CircID chr8:17301340|17301450
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCCTACCTTTGTGTTTGTCCTCTCACTGTCCCTACTCCTGTCAGGAATGCTTACTAGCTATCACCAGAATGTCCAAGTTTAAATCTTTCACAGTCCTGTTAAAATGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:17301340|17301450 hsa-miR-890 0 0 1
chr8:17301340|17301450 hsa-miR-1179 0 0 1
chr8:17301340|17301450 hsa-miR-1200 0 0 1
chr8:17301340|17301450 hsa-miR-548m 0 0 1
chr8:17301340|17301450 hsa-miR-628-3p 0 0 1
chr8:17301340|17301450 hsa-miR-921 1 1 0
chr8:17301340|17301450 hsa-miR-3122 1 0 0
chr8:17301340|17301450 hsa-miR-3132 1 0 0
chr8:17301340|17301450 hsa-miR-3138 1 0 0
chr8:17301340|17301450 hsa-miR-3169 1 1 0
chr8:17301340|17301450 hsa-miR-4298 1 0 0
chr8:17301340|17301450 hsa-miR-3660 0 1 0
chr8:17301340|17301450 hsa-miR-4514 1 0 0
chr8:17301340|17301450 hsa-miR-4526 0 1 0
chr8:17301340|17301450 hsa-miR-4538 1 0 0
chr8:17301340|17301450 hsa-miR-4673 1 0 0
chr8:17301340|17301450 hsa-miR-4688 1 1 0
chr8:17301340|17301450 hsa-miR-4689 1 0 0
chr8:17301340|17301450 hsa-miR-4739 1 0 0
chr8:17301340|17301450 hsa-miR-6081 1 0 0
chr8:17301340|17301450 hsa-miR-6085 1 0 0
chr8:17301340|17301450 hsa-miR-6165 1 0 0
chr8:17301340|17301450 hsa-miR-7150 1 0 0
chr8:17301340|17301450 hsa-miR-8052 1 1 0
chr8:17301340|17301450 hsa-miR-8089 1 0 0
chr8:17301340|17301450 hsa-miR-211-3p 1 0 0
chr8:17301340|17301450 hsa-miR-4433b-3p 1 1 0
chr8:17301340|17301450 hsa-miR-6734-5p 1 0 0
chr8:17301340|17301450 hsa-miR-4700-3p 0 1 0
chr8:17301340|17301450 hsa-miR-4433a-3p 1 1 0
chr8:17301340|17301450 hsa-miR-7106-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6873-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6746-5p 1 0 0
chr8:17301340|17301450 hsa-miR-7154-3p 1 0 0
chr8:17301340|17301450 hsa-miR-6727-5p 1 0 0
chr8:17301340|17301450 hsa-miR-197-5p 1 0 0
chr8:17301340|17301450 hsa-miR-7845-5p 1 1 0
chr8:17301340|17301450 hsa-miR-6798-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6881-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6810-5p 1 0 0
chr8:17301340|17301450 hsa-miR-1226-5p 1 0 0
chr8:17301340|17301450 hsa-miR-1229-5p 1 0 0
chr8:17301340|17301450 hsa-miR-92b-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6789-5p 1 0 0
chr8:17301340|17301450 hsa-miR-3162-5p 1 0 0
chr8:17301340|17301450 hsa-miR-7850-5p 1 0 0
chr8:17301340|17301450 hsa-miR-423-5p 1 0 0
chr8:17301340|17301450 hsa-miR-483-5p 1 0 0
chr8:17301340|17301450 hsa-miR-1207-5p 1 0 0
chr8:17301340|17301450 hsa-miR-1233-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6778-5p 1 1 0
chr8:17301340|17301450 hsa-miR-6743-5p 1 0 0
chr8:17301340|17301450 hsa-miR-7111-5p 1 0 0
chr8:17301340|17301450 hsa-miR-4728-5p 1 0 0
chr8:17301340|17301450 hsa-miR-5196-5p 1 0 0
chr8:17301340|17301450 hsa-miR-4725-3p 1 0 0
chr8:17301340|17301450 hsa-miR-4745-5p 1 0 0
chr8:17301340|17301450 hsa-miR-4749-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6738-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6795-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6883-5p 1 0 0
chr8:17301340|17301450 hsa-miR-6887-5p 1 0 0
chr8:17301340|17301450 hsa-miR-4758-5p 1 0 0
chr8:17301340|17301450 hsa-miR-1914-3p 1 0 0
chr8:17301340|17301450 hsa-miR-3679-5p 1 0 0
chr8:17301340|17301450 hsa-miR-2682-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr8:17301340|17301450
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MCLSSHCPYSCQECLLAITRMSKFKSFTVLLKC
Nucleotide Sequence TTGTGTTTGTCCTCTCACTGTCCCTACTCCTGTCAGGAATGCTTACTAGCTATCACCAGAATGTCCAAGTTTAAATCTTTCACAGTCCTGTTAAAATGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab