CircRNA Information

General Information
circRNA Basic Information
CircID chr8:22163943|22164310
Strand +
CircType exon
Host Gene ENSG00000168484.11;
Algorism CIRI2;
Sequence CCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGACCCTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAGAATCAGGGGAGTGGGAAGTACCGGTCTGTGAGCTTCCCCTCCCCCGAGTTGCCTGGATGACCCCGCTTCAGTGGACGCCCCAGCGCCTGGTCAGCGCGAGCGCTCCTCCACAGCCCGGGCAGGTGGCCCGAGCGCTCCTCCGCTGCTGATCAGGGGCCCTGGGATCACACCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCTGAGCCTGCATCTCGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:22163943|22164310 hsa-miR-27a-5p 0 0 1
chr8:22163943|22164310 hsa-miR-27a-3p 0 0 1
chr8:22163943|22164310 hsa-miR-10a-5p 0 0 1
chr8:22163943|22164310 hsa-miR-10a-3p 0 0 1
chr8:22163943|22164310 hsa-miR-10b-5p 0 0 1
chr8:22163943|22164310 hsa-miR-10b-3p 0 0 1
chr8:22163943|22164310 hsa-miR-214-5p 0 0 1
chr8:22163943|22164310 hsa-miR-214-3p 0 0 1
chr8:22163943|22164310 hsa-miR-27b-5p 0 0 1
chr8:22163943|22164310 hsa-miR-27b-3p 0 0 1
chr8:22163943|22164310 hsa-miR-383-5p 0 0 1
chr8:22163943|22164310 hsa-miR-383-3p 0 0 1
chr8:22163943|22164310 hsa-miR-484 0 1 1
chr8:22163943|22164310 hsa-miR-503-5p 0 0 1
chr8:22163943|22164310 hsa-miR-503-3p 0 0 1
chr8:22163943|22164310 hsa-miR-612 1 1 1
chr8:22163943|22164310 hsa-miR-658 0 1 1
chr8:22163943|22164310 hsa-miR-765 0 1 1
chr8:22163943|22164310 hsa-miR-543 0 0 1
chr8:22163943|22164310 hsa-miR-922 0 0 1
chr8:22163943|22164310 hsa-miR-1203 0 0 1
chr8:22163943|22164310 hsa-miR-1281 0 0 1
chr8:22163943|22164310 hsa-miR-671-5p 1 1 1
chr8:22163943|22164310 hsa-miR-296-5p 0 0 1
chr8:22163943|22164310 hsa-miR-941 0 1 1
chr8:22163943|22164310 hsa-miR-331-3p 0 0 1
chr8:22163943|22164310 hsa-miR-188-3p 0 0 1
chr8:22163943|22164310 hsa-miR-513a-5p 0 0 1
chr8:22163943|22164310 hsa-miR-1260 0 0 1
chr8:22163943|22164310 hsa-miR-220c 0 0 1
chr8:22163943|22164310 hsa-miR-644 0 0 1
chr8:22163943|22164310 hsa-miR-1285 0 0 1
chr8:22163943|22164310 hsa-miR-24 0 0 1
chr8:22163943|22164310 hsa-miR-147 0 0 1
chr8:22163943|22164310 hsa-miR-663a 1 0 0
chr8:22163943|22164310 hsa-miR-657 0 1 0
chr8:22163943|22164310 hsa-miR-762 1 0 0
chr8:22163943|22164310 hsa-miR-663b 1 0 0
chr8:22163943|22164310 hsa-miR-1268a 1 0 0
chr8:22163943|22164310 hsa-miR-2861 1 0 0
chr8:22163943|22164310 hsa-miR-3155a 0 1 0
chr8:22163943|22164310 hsa-miR-3181 0 1 0
chr8:22163943|22164310 hsa-miR-4253 0 1 0
chr8:22163943|22164310 hsa-miR-3610 1 0 0
chr8:22163943|22164310 hsa-miR-3918 0 1 0
chr8:22163943|22164310 hsa-miR-1268b 1 0 0
chr8:22163943|22164310 hsa-miR-3155b 0 1 0
chr8:22163943|22164310 hsa-miR-4739 0 1 0
chr8:22163943|22164310 hsa-miR-4741 1 1 0
chr8:22163943|22164310 hsa-miR-5787 1 0 0
chr8:22163943|22164310 hsa-miR-6860 1 1 0
chr8:22163943|22164310 hsa-miR-7974 0 1 0
chr8:22163943|22164310 hsa-miR-8089 1 0 0
chr8:22163943|22164310 hsa-miR-12115 1 0 0
chr8:22163943|22164310 hsa-miR-4731-5p 1 1 0
chr8:22163943|22164310 hsa-miR-6765-5p 1 1 0
chr8:22163943|22164310 hsa-miR-6836-3p 1 0 0
chr8:22163943|22164310 hsa-miR-4708-5p 0 1 0
chr8:22163943|22164310 hsa-miR-3934-5p 0 1 0
chr8:22163943|22164310 hsa-miR-7114-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6089 1 0 0
chr8:22163943|22164310 hsa-miR-6746-5p 1 0 0
chr8:22163943|22164310 hsa-miR-6840-5p 0 1 0
chr8:22163943|22164310 hsa-miR-1178-5p 0 1 0
chr8:22163943|22164310 hsa-miR-3189-5p 1 0 0
chr8:22163943|22164310 hsa-miR-6873-3p 1 1 0
chr8:22163943|22164310 hsa-miR-6817-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6786-5p 1 0 0
chr8:22163943|22164310 hsa-miR-4793-5p 1 0 0
chr8:22163943|22164310 hsa-miR-4640-5p 1 0 0
chr8:22163943|22164310 hsa-miR-3667-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6749-5p 1 0 0
chr8:22163943|22164310 hsa-miR-4787-5p 1 0 0
chr8:22163943|22164310 hsa-miR-5196-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6789-5p 1 0 0
chr8:22163943|22164310 hsa-miR-7160-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6743-3p 0 1 0
chr8:22163943|22164310 hsa-miR-1911-3p 0 1 0
chr8:22163943|22164310 hsa-miR-3619-3p 1 0 0
chr8:22163943|22164310 hsa-miR-381-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6871-3p 0 1 0
chr8:22163943|22164310 hsa-miR-2277-5p 1 0 0
chr8:22163943|22164310 hsa-miR-668-5p 1 1 0
chr8:22163943|22164310 hsa-miR-3670 0 1 0
chr8:22163943|22164310 hsa-miR-5587-3p 0 1 0
chr8:22163943|22164310 hsa-miR-5699-5p 0 1 0
chr8:22163943|22164310 hsa-miR-3156-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6812-5p 1 0 0
chr8:22163943|22164310 hsa-miR-6870-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6752-5p 1 0 0
chr8:22163943|22164310 hsa-miR-7110-5p 1 0 0
chr8:22163943|22164310 hsa-miR-11181-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6774-5p 1 0 0
chr8:22163943|22164310 hsa-miR-7111-5p 0 1 0
chr8:22163943|22164310 hsa-miR-4728-5p 0 1 0
chr8:22163943|22164310 hsa-miR-5189-5p 0 1 0
chr8:22163943|22164310 hsa-miR-5196-5p 1 0 0
chr8:22163943|22164310 hsa-miR-6780b-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6862-5p 0 1 0
chr8:22163943|22164310 hsa-miR-1909-3p 1 0 0
chr8:22163943|22164310 hsa-miR-328-5p 1 0 0
chr8:22163943|22164310 hsa-miR-4649-5p 0 1 0
chr8:22163943|22164310 hsa-miR-4685-5p 0 1 0
chr8:22163943|22164310 hsa-miR-4726-5p 1 0 0
chr8:22163943|22164310 hsa-miR-6729-5p 1 1 0
chr8:22163943|22164310 hsa-miR-6883-5p 0 1 0
chr8:22163943|22164310 hsa-miR-1238-5p 0 1 0
chr8:22163943|22164310 hsa-miR-10396a-3p 0 1 0
chr8:22163943|22164310 hsa-miR-10396b-3p 0 1 0
chr8:22163943|22164310 hsa-miR-6739-5p 0 1 0
chr8:22163943|22164310 hsa-miR-1285-3p 0 1 0
chr8:22163943|22164310 hsa-miR-1914-3p 1 0 0
chr8:22163943|22164310 hsa-miR-6785-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6724-5p 1 0 0
chr8:22163943|22164310 hsa-miR-5581-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6783-3p 0 1 0
chr8:22163943|22164310 hsa-miR-4768-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6764-5p 0 1 0
chr8:22163943|22164310 hsa-miR-6833-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:22163943|22164310
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MLRMDRENQGSGKYRSVSFPSPELPG
Nucleotide Sequence ATGTTGAGGATGGACAGAGAGAATCAGGGGAGTGGGAAGTACCGGTCTGTGAGCTTCCCCTCCCCCGAGTTGCCTGGATGA
CircID chr8:22163943|22164310
ORF Type ORF2
Protein Length 78
Nucleotide Length 234
Protein Sequence MDDPASVDAPAPGQRERSSTARAGGPSAPPLLIRGPGITPAHRRRPRCSRAAPRHTGCSRPCPGRPGPLRRVLSLHLA
Nucleotide Sequence CTGGATGACCCCGCTTCAGTGGACGCCCCAGCGCCTGGTCAGCGCGAGCGCTCCTCCACAGCCCGGGCAGGTGGCCCGAGCGCTCCTCCGCTGCTGATCAGGGGCCCTGGGATCACACCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCTGAGCCTGCATCTCGCC
CircID chr8:22163943|22164310
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MTPLQWTPQRLVSASAPPQPGQVARALLRC
Nucleotide Sequence ATGACCCCGCTTCAGTGGACGCCCCAGCGCCTGGTCAGCGCGAGCGCTCCTCCACAGCCCGGGCAGGTGGCCCGAGCGCTCCTCCGCTGCTGA
CircID chr8:22163943|22164310
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MGSHLLTGGVLDVVERHLATQGAHGHAQEGRVPSGGC
Nucleotide Sequence CTGGGATCACACCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCTGA
CircID chr8:22163943|22164310
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MPGLWRSARADQALGRPLKRGHPGNSGEGKLTDRYFPLP
Nucleotide Sequence CTGCCCGGGCTGTGGAGGAGCGCTCGCGCTGACCAGGCGCTGGGGCGTCCACTGAAGCGGGGTCATCCAGGCAACTCGGGGGAGGGGAAGCTCACAGACCGGTACTTCCCACTCCCCTGA
CircID chr8:22163943|22164310
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MSILNIPLLHRVSGSPNGKGNAPGK
Nucleotide Sequence CTGTCCATCCTCAACATTCCTTTGCTTCACAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAA
CircID chr8:22163943|22164310
ORF Type ORF7
Protein Length 29
Nucleotide Length 87
Protein Sequence MILSVHPQHSFASQGQWKPQRERKRPGQR
Nucleotide Sequence CTGATTCTCTCTGTCCATCCTCAACATTCCTTTGCTTCACAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab