CircRNA Information

General Information
circRNA Basic Information
CircID chr8:22164192|22164415
Strand +
CircType exon
Host Gene ENSG00000168484.11;
Algorism CIRI2;
Sequence CTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGACCCTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAGAATCAGGGGAGTGGGAAGTACCGGTCTGTGAGCTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:22164192|22164415 hsa-miR-27a-5p 0 0 1
chr8:22164192|22164415 hsa-miR-27a-3p 0 0 1
chr8:22164192|22164415 hsa-miR-31-5p 0 0 1
chr8:22164192|22164415 hsa-miR-31-3p 0 0 1
chr8:22164192|22164415 hsa-miR-27b-5p 0 0 1
chr8:22164192|22164415 hsa-miR-27b-3p 0 0 1
chr8:22164192|22164415 hsa-miR-507 -2 0 1
chr8:22164192|22164415 hsa-miR-539-5p 0 0 1
chr8:22164192|22164415 hsa-miR-539-3p 0 0 1
chr8:22164192|22164415 hsa-miR-557 -6 0 1
chr8:22164192|22164415 hsa-miR-1301-5p 0 0 1
chr8:22164192|22164415 hsa-miR-1301-3p 0 0 1
chr8:22164192|22164415 hsa-miR-543 -1 0 1
chr8:22164192|22164415 hsa-miR-920 -13 1 1
chr8:22164192|22164415 hsa-miR-939-5p 0 0 1
chr8:22164192|22164415 hsa-miR-939-3p 0 0 1
chr8:22164192|22164415 hsa-miR-1182 -9 1 1
chr8:22164192|22164415 hsa-miR-671-5p -22 1 1
chr8:22164192|22164415 hsa-miR-193a-5p -17 1 1
chr8:22164192|22164415 hsa-miR-483-5p -13 1 1
chr8:22164192|22164415 hsa-miR-331-3p -12 0 1
chr8:22164192|22164415 hsa-miR-188-3p -4 0 1
chr8:22164192|22164415 hsa-miR-513a-5p -7 0 1
chr8:22164192|22164415 hsa-miR-324-3p -7 0 1
chr8:22164192|22164415 hsa-miR-450b-5p 4 0 1
chr8:22164192|22164415 hsa-miR-1260 0 0 1
chr8:22164192|22164415 hsa-miR-220c 0 0 1
chr8:22164192|22164415 hsa-miR-220a 0 0 1
chr8:22164192|22164415 hsa-miR-612 -14 1 0
chr8:22164192|22164415 hsa-miR-3175 -12 1 0
chr8:22164192|22164415 hsa-miR-2392 0 1 0
chr8:22164192|22164415 hsa-miR-8085 -13 1 0
chr8:22164192|22164415 hsa-miR-8089 -19 1 0
chr8:22164192|22164415 hsa-miR-211-3p -12 1 0
chr8:22164192|22164415 hsa-miR-3150a-3p -8 1 0
chr8:22164192|22164415 hsa-miR-6894-5p 0 1 0
chr8:22164192|22164415 hsa-miR-766-5p -14 1 0
chr8:22164192|22164415 hsa-miR-6840-5p -19 1 0
chr8:22164192|22164415 hsa-miR-1178-5p -5 1 0
chr8:22164192|22164415 hsa-miR-6873-3p -20 1 0
chr8:22164192|22164415 hsa-miR-6817-3p -13 1 0
chr8:22164192|22164415 hsa-miR-6871-5p -21 1 0
chr8:22164192|22164415 hsa-miR-6760-5p -7 1 0
chr8:22164192|22164415 hsa-miR-5196-3p -12 1 0
chr8:22164192|22164415 hsa-miR-208a-5p -2 1 0
chr8:22164192|22164415 hsa-miR-6738-3p 2 1 0
chr8:22164192|22164415 hsa-miR-3670 -15 1 0
chr8:22164192|22164415 hsa-miR-767-3p -11 1 0
chr8:22164192|22164415 hsa-miR-5587-3p -10 1 0
chr8:22164192|22164415 hsa-miR-5699-5p -13 1 0
chr8:22164192|22164415 hsa-miR-3156-3p -14 1 0
chr8:22164192|22164415 hsa-miR-6870-5p -18 1 0
chr8:22164192|22164415 hsa-miR-6726-5p -18 1 0
chr8:22164192|22164415 hsa-miR-6763-5p -16 1 0
chr8:22164192|22164415 hsa-miR-4749-5p -20 1 0
chr8:22164192|22164415 hsa-miR-1238-5p 0 1 0
chr8:22164192|22164415 hsa-miR-10396a-3p -14 1 0
chr8:22164192|22164415 hsa-miR-10396b-3p -13 1 0
chr8:22164192|22164415 hsa-miR-6731-5p -15 1 0
chr8:22164192|22164415 hsa-miR-6739-5p -3 1 0
chr8:22164192|22164415 hsa-miR-4768-5p -14 1 0
chr8:22164192|22164415 hsa-miR-6833-3p -17 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:22164192|22164415
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MSLRCGQKQLLARLQKLQKTLCPGRFLSRWGFH
Nucleotide Sequence TTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGA
CircID chr8:22164192|22164415
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence LPTPILSPSSHFSRACPCGVGRSSFLPVCKSCKRPFARGVSFPVGASTDPVKQRNVEDGQRESGEWEVPVCELP
Nucleotide Sequence CTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGACCCTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAGAATCAGGGGAGTGGGAAGTACCGGTCTGTGAGCTTCCC
CircID chr8:22164192|22164415
ORF Type ORF3
Protein Length 60
Nucleotide Length 180
Protein Sequence MSILNIPLLHRVSGSPNGKGNAPGKGSFAAFADGQEAASAHTAGTSPGEMGAWGEDGSGQ
Nucleotide Sequence CTGTCCATCCTCAACATTCCTTTGCTTCACAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTTTTGCAGCTTTTGCAGACGGGCAAGAAGCTGCTTCTGCCCACACCGCAGGGACAAGCCCTGGAGAAATGGGAGCTTGGGGAGAGGATGGGAGTGGGCAG
CircID chr8:22164192|22164415
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MQLLQTGKKLLLPTPQGQALEKWELGERMGVGR
Nucleotide Sequence TTGCAGCTTTTGCAGACGGGCAAGAAGCTGCTTCTGCCCACACCGCAGGGACAAGCCCTGGAGAAATGGGAGCTTGGGGAGAGGATGGGAGTGGGCAGA
CircID chr8:22164192|22164415
ORF Type ORF5
Protein Length 64
Nucleotide Length 192
Protein Sequence MILSVHPQHSFASQGQWKPQRERKRPGQRVFCSFCRRARSCFCPHRRDKPWRNGSLGRGWEWAE
Nucleotide Sequence CTGATTCTCTCTGTCCATCCTCAACATTCCTTTGCTTCACAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTTTTGCAGCTTTTGCAGACGGGCAAGAAGCTGCTTCTGCCCACACCGCAGGGACAAGCCCTGGAGAAATGGGAGCTTGGGGAGAGGATGGGAGTGGGCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab