CircRNA Information

General Information
circRNA Basic Information
CircID chr8:22594004|22594164
Strand -
CircType exon
Host Gene ENSG00000120913.22;
Algorism CIRI2;
Sequence ATGAGCTAAGTTTGGAGACCTGAGGCCCCTTTGTCCTCGCTGGGTGGGCCAAGGTCTGGGACCTGTCTTGGACTGTGGGAGACTCACCCTCACCTTGCCAGGCCTCTCCCCTGCAGGACTGGCATTGCACTAGTCTGAGGTGGCCACTGCCTTTGATCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:22594004|22594164 hsa-miR-31-5p 0 0 1
chr8:22594004|22594164 hsa-miR-31-3p 0 0 1
chr8:22594004|22594164 hsa-miR-34a-5p 0 0 1
chr8:22594004|22594164 hsa-miR-34a-3p 0 0 1
chr8:22594004|22594164 hsa-miR-130a-5p 0 0 1
chr8:22594004|22594164 hsa-miR-130a-3p 0 0 1
chr8:22594004|22594164 hsa-miR-150-5p 0 0 1
chr8:22594004|22594164 hsa-miR-150-3p 0 0 1
chr8:22594004|22594164 hsa-miR-301a-5p 0 0 1
chr8:22594004|22594164 hsa-miR-301a-3p 0 0 1
chr8:22594004|22594164 hsa-miR-130b-5p 0 0 1
chr8:22594004|22594164 hsa-miR-130b-3p 0 0 1
chr8:22594004|22594164 hsa-miR-328-5p 0 0 1
chr8:22594004|22594164 hsa-miR-328-3p 0 0 1
chr8:22594004|22594164 hsa-miR-449a 0 0 1
chr8:22594004|22594164 hsa-miR-588 0 1 1
chr8:22594004|22594164 hsa-miR-611 0 0 1
chr8:22594004|22594164 hsa-miR-627-5p 0 0 1
chr8:22594004|22594164 hsa-miR-627-3p 0 0 1
chr8:22594004|22594164 hsa-miR-449b-5p 0 0 1
chr8:22594004|22594164 hsa-miR-449b-3p 0 0 1
chr8:22594004|22594164 hsa-miR-454-5p 0 0 1
chr8:22594004|22594164 hsa-miR-454-3p 0 0 1
chr8:22594004|22594164 hsa-miR-301b-5p 0 0 1
chr8:22594004|22594164 hsa-miR-301b-3p 0 0 1
chr8:22594004|22594164 hsa-miR-924 0 0 1
chr8:22594004|22594164 hsa-miR-1205 0 0 1
chr8:22594004|22594164 hsa-miR-532-3p 0 1 1
chr8:22594004|22594164 hsa-miR-188-3p 0 1 1
chr8:22594004|22594164 hsa-miR-455-3p 0 0 1
chr8:22594004|22594164 hsa-miR-34c-5p 0 0 1
chr8:22594004|22594164 hsa-miR-515-5p 0 0 1
chr8:22594004|22594164 hsa-miR-1826 0 0 1
chr8:22594004|22594164 hsa-miR-1202 1 0 0
chr8:22594004|22594164 hsa-miR-1268a 1 0 0
chr8:22594004|22594164 hsa-miR-2861 1 0 0
chr8:22594004|22594164 hsa-miR-3175 0 1 0
chr8:22594004|22594164 hsa-miR-4295 0 1 0
chr8:22594004|22594164 hsa-miR-1268b 1 0 0
chr8:22594004|22594164 hsa-miR-4706 1 1 0
chr8:22594004|22594164 hsa-miR-4710 0 1 0
chr8:22594004|22594164 hsa-miR-4739 1 0 0
chr8:22594004|22594164 hsa-miR-8073 0 1 0
chr8:22594004|22594164 hsa-miR-370-3p 1 0 0
chr8:22594004|22594164 hsa-miR-500b-3p 0 1 0
chr8:22594004|22594164 hsa-miR-6510-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6089 1 0 0
chr8:22594004|22594164 hsa-miR-6798-5p 1 0 0
chr8:22594004|22594164 hsa-miR-4713-5p 0 1 0
chr8:22594004|22594164 hsa-miR-6749-5p 1 0 0
chr8:22594004|22594164 hsa-miR-4787-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6824-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6813-3p 0 1 0
chr8:22594004|22594164 hsa-miR-1180-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6895-3p 1 0 0
chr8:22594004|22594164 hsa-miR-5004-5p 0 1 0
chr8:22594004|22594164 hsa-miR-4524b-3p 0 1 0
chr8:22594004|22594164 hsa-miR-4763-3p 1 0 0
chr8:22594004|22594164 hsa-miR-6787-5p 1 0 0
chr8:22594004|22594164 hsa-miR-1343-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6756-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6813-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6842-5p 1 0 0
chr8:22594004|22594164 hsa-miR-7107-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6722-3p 1 1 0
chr8:22594004|22594164 hsa-miR-6779-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6780b-5p 1 1 0
chr8:22594004|22594164 hsa-miR-6836-5p 1 0 0
chr8:22594004|22594164 hsa-miR-10526-3p 1 1 0
chr8:22594004|22594164 hsa-miR-1909-3p 1 0 0
chr8:22594004|22594164 hsa-miR-4649-5p 1 0 0
chr8:22594004|22594164 hsa-miR-4745-3p 1 0 0
chr8:22594004|22594164 hsa-miR-4749-5p 1 0 0
chr8:22594004|22594164 hsa-miR-6735-5p 0 1 0
chr8:22594004|22594164 hsa-miR-939-5p 1 0 0
chr8:22594004|22594164 hsa-miR-34b-5p 0 1 0
chr8:22594004|22594164 hsa-miR-6731-5p 0 1 0
chr8:22594004|22594164 hsa-miR-3184-5p 1 1 0
chr8:22594004|22594164 hsa-miR-4701-5p 0 1 0
chr8:22594004|22594164 hsa-miR-2682-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:22594004|22594164
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MSSLGGPRSGTCLGLWETHPHLARPLPCRTGIALV
Nucleotide Sequence TTGTCCTCGCTGGGTGGGCCAAGGTCTGGGACCTGTCTTGGACTGTGGGAGACTCACCCTCACCTTGCCAGGCCTCTCCCCTGCAGGACTGGCATTGCACTAGTCTGA
CircID chr8:22594004|22594164
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MRPLCPRWVGQGLGPVLDCGRLTLTLPGLSPAGLALH
Nucleotide Sequence CTGAGGCCCCTTTGTCCTCGCTGGGTGGGCCAAGGTCTGGGACCTGTCTTGGACTGTGGGAGACTCACCCTCACCTTGCCAGGCCTCTCCCCTGCAGGACTGGCATTGCACTAG
CircID chr8:22594004|22594164
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSWTVGDSPSPCQASPLQDWHCTSLRWPLPLIN
Nucleotide Sequence CTGTCTTGGACTGTGGGAGACTCACCCTCACCTTGCCAGGCCTCTCCCCTGCAGGACTGGCATTGCACTAGTCTGAGGTGGCCACTGCCTTTGATCAAC
CircID chr8:22594004|22594164
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence LIKGSGHLRLVQCQSCRGEAWQGEGESPTVQDRSQTLAHPARTKGPQVSKLSS
Nucleotide Sequence TTGATCAAAGGCAGTGGCCACCTCAGACTAGTGCAATGCCAGTCCTGCAGGGGAGAGGCCTGGCAAGGTGAGGGTGAGTCTCCCACAGTCCAAGACAGGTCCCAGACCTTGGCCCACCCAGCGAGGACAAAGGGGCCTCAGGTCTCCAAACTTAGCTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab