CircRNA Information

General Information
circRNA Basic Information
CircID chr8:23019852|23020061
Strand +
CircType exon
Host Gene ENSG00000008853.15;
Algorism CIRI2;
Sequence CAGGGCTGTGCTCCTGCTGGGACTCCTTCCTTCCTCCCTCCCCTCTGTTTTCAGGCTTGGCCTCCTGGGGGTGTTTCCTGAATCCGACTCCCCAGAGTTTAAAGAGCTAGGTTCCTGGGGACTGGGATTCATACCTCCTTCCCCTCTCTCTCCTGCCTGCTCCTCCCTCTGGGGACAGGGACACCAATGTTGGCCTGGCTCACCCACAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:23019852|23020061 hsa-miR-214-5p 0 0 1
chr8:23019852|23020061 hsa-miR-214-3p 0 0 1
chr8:23019852|23020061 hsa-miR-185-5p 0 0 1
chr8:23019852|23020061 hsa-miR-185-3p 0 0 1
chr8:23019852|23020061 hsa-miR-326 0 0 1
chr8:23019852|23020061 hsa-miR-202-5p 0 0 1
chr8:23019852|23020061 hsa-miR-202-3p 0 0 1
chr8:23019852|23020061 hsa-miR-570-5p 0 0 1
chr8:23019852|23020061 hsa-miR-570-3p 0 0 1
chr8:23019852|23020061 hsa-miR-637 0 0 1
chr8:23019852|23020061 hsa-miR-765 1 1 1
chr8:23019852|23020061 hsa-miR-665 1 1 1
chr8:23019852|23020061 hsa-miR-873-5p 0 0 1
chr8:23019852|23020061 hsa-miR-873-3p 0 0 1
chr8:23019852|23020061 hsa-miR-939-5p 0 0 1
chr8:23019852|23020061 hsa-miR-939-3p 0 0 1
chr8:23019852|23020061 hsa-miR-940 1 0 1
chr8:23019852|23020061 hsa-miR-1262 0 0 1
chr8:23019852|23020061 hsa-miR-1252-5p 0 0 1
chr8:23019852|23020061 hsa-miR-1252-3p 0 0 1
chr8:23019852|23020061 hsa-miR-1321 0 0 1
chr8:23019852|23020061 hsa-miR-339-5p 0 1 1
chr8:23019852|23020061 hsa-miR-1289 0 1 1
chr8:23019852|23020061 hsa-miR-361-3p 0 1 1
chr8:23019852|23020061 hsa-miR-330-5p 0 0 1
chr8:23019852|23020061 hsa-miR-1274a 0 0 1
chr8:23019852|23020061 hsa-miR-1274b 0 0 1
chr8:23019852|23020061 hsa-miR-658 1 0 0
chr8:23019852|23020061 hsa-miR-3141 1 0 0
chr8:23019852|23020061 hsa-miR-3197 1 0 0
chr8:23019852|23020061 hsa-miR-3612 1 0 0
chr8:23019852|23020061 hsa-miR-4476 0 1 0
chr8:23019852|23020061 hsa-miR-4488 1 0 0
chr8:23019852|23020061 hsa-miR-4507 1 0 0
chr8:23019852|23020061 hsa-miR-4510 1 1 0
chr8:23019852|23020061 hsa-miR-4514 1 1 0
chr8:23019852|23020061 hsa-miR-4530 0 1 0
chr8:23019852|23020061 hsa-miR-4533 1 1 0
chr8:23019852|23020061 hsa-miR-4644 0 1 0
chr8:23019852|23020061 hsa-miR-4651 1 0 0
chr8:23019852|23020061 hsa-miR-4673 1 0 0
chr8:23019852|23020061 hsa-miR-4688 1 0 0
chr8:23019852|23020061 hsa-miR-4706 1 0 0
chr8:23019852|23020061 hsa-miR-4739 1 1 0
chr8:23019852|23020061 hsa-miR-5194 1 0 0
chr8:23019852|23020061 hsa-miR-5739 1 0 0
chr8:23019852|23020061 hsa-miR-6081 0 1 0
chr8:23019852|23020061 hsa-miR-6090 1 0 0
chr8:23019852|23020061 hsa-miR-6127 1 1 0
chr8:23019852|23020061 hsa-miR-6133 1 1 0
chr8:23019852|23020061 hsa-miR-6165 1 1 0
chr8:23019852|23020061 hsa-miR-8085 1 0 0
chr8:23019852|23020061 hsa-miR-8089 1 1 0
chr8:23019852|23020061 hsa-miR-12118 1 0 0
chr8:23019852|23020061 hsa-miR-134-3p 1 1 0
chr8:23019852|23020061 hsa-miR-6734-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6840-3p 0 1 0
chr8:23019852|23020061 hsa-miR-1247-3p 0 1 0
chr8:23019852|23020061 hsa-miR-4433a-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6765-5p 1 0 0
chr8:23019852|23020061 hsa-miR-7106-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6825-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6894-5p 1 0 0
chr8:23019852|23020061 hsa-miR-1972 0 1 0
chr8:23019852|23020061 hsa-miR-125a-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6799-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6510-5p 1 1 0
chr8:23019852|23020061 hsa-miR-7114-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6089 1 0 0
chr8:23019852|23020061 hsa-miR-6873-5p 0 1 0
chr8:23019852|23020061 hsa-miR-6880-5p 1 0 0
chr8:23019852|23020061 hsa-miR-7847-3p 1 0 0
chr8:23019852|23020061 hsa-miR-4695-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6746-5p 1 0 0
chr8:23019852|23020061 hsa-miR-4722-5p 0 1 0
chr8:23019852|23020061 hsa-miR-4755-3p 1 1 0
chr8:23019852|23020061 hsa-miR-6806-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6759-5p 1 1 0
chr8:23019852|23020061 hsa-miR-197-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6783-5p 0 1 0
chr8:23019852|23020061 hsa-miR-3180-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6748-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6793-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6796-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6732-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6805-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6798-5p 1 1 0
chr8:23019852|23020061 hsa-miR-2467-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6782-5p 1 0 0
chr8:23019852|23020061 hsa-miR-5008-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6786-5p 1 0 0
chr8:23019852|23020061 hsa-miR-7109-5p 1 0 0
chr8:23019852|23020061 hsa-miR-1229-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6847-5p 1 0 0
chr8:23019852|23020061 hsa-miR-149-3p 1 1 0
chr8:23019852|23020061 hsa-miR-6824-5p 1 0 0
chr8:23019852|23020061 hsa-miR-3162-5p 0 1 0
chr8:23019852|23020061 hsa-miR-5010-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6895-5p 1 0 0
chr8:23019852|23020061 hsa-miR-423-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6856-3p 0 1 0
chr8:23019852|23020061 hsa-miR-483-5p 1 0 0
chr8:23019852|23020061 hsa-miR-514a-5p 0 1 0
chr8:23019852|23020061 hsa-miR-1207-5p 1 1 0
chr8:23019852|23020061 hsa-miR-1233-5p 1 0 0
chr8:23019852|23020061 hsa-miR-4763-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6778-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6816-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6870-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6893-5p 1 1 0
chr8:23019852|23020061 hsa-miR-1343-5p 1 0 0
chr8:23019852|23020061 hsa-miR-3180 1 0 0
chr8:23019852|23020061 hsa-miR-6743-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6754-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6756-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6803-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6851-5p 1 0 0
chr8:23019852|23020061 hsa-miR-11181-3p 1 1 0
chr8:23019852|23020061 hsa-miR-1249-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6722-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6751-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6780a-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6797-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6808-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6875-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6879-5p 1 0 0
chr8:23019852|23020061 hsa-miR-7111-5p 1 1 0
chr8:23019852|23020061 hsa-miR-4728-5p 1 1 0
chr8:23019852|23020061 hsa-miR-5196-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6780b-5p 1 0 0
chr8:23019852|23020061 hsa-miR-1237-5p 1 0 0
chr8:23019852|23020061 hsa-miR-328-5p 1 0 0
chr8:23019852|23020061 hsa-miR-4649-5p 1 0 0
chr8:23019852|23020061 hsa-miR-4701-3p 1 0 0
chr8:23019852|23020061 hsa-miR-4725-3p 1 1 0
chr8:23019852|23020061 hsa-miR-4745-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6729-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6735-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6738-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6795-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6858-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6883-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6887-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6889-5p 0 1 0
chr8:23019852|23020061 hsa-miR-4723-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6885-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6511b-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6731-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6758-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6856-5p 1 1 0
chr8:23019852|23020061 hsa-miR-1914-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6736-5p 1 0 0
chr8:23019852|23020061 hsa-miR-3116 0 1 0
chr8:23019852|23020061 hsa-miR-3173-3p 1 0 0
chr8:23019852|23020061 hsa-miR-4747-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6876-5p 1 1 0
chr8:23019852|23020061 hsa-miR-6891-5p 1 0 0
chr8:23019852|23020061 hsa-miR-4716-3p 1 0 0
chr8:23019852|23020061 hsa-miR-6766-5p 1 0 0
chr8:23019852|23020061 hsa-miR-6785-5p 1 1 0
chr8:23019852|23020061 hsa-miR-4667-5p 0 1 0
chr8:23019852|23020061 hsa-miR-3184-5p 1 0 0
chr8:23019852|23020061 hsa-miR-3689d 0 1 0
chr8:23019852|23020061 hsa-miR-6791-5p 1 0 0
chr8:23019852|23020061 hsa-miR-3619-5p 0 1 0
chr8:23019852|23020061 hsa-miR-4661-5p 0 1 0
chr8:23019852|23020061 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:23019852|23020061
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MGTGIHTSFPSLSCLLLPLGTGTPMLAWLTHS
Nucleotide Sequence CTGGGGACTGGGATTCATACCTCCTTCCCCTCTCTCTCCTGCCTGCTCCTCCCTCTGGGGACAGGGACACCAATGTTGGCCTGGCTCACCCACAGC
CircID chr8:23019852|23020061
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MLGLLPSSLPSVFRLGLLGVFPESDSPEFKELGSWGLGFIPPSPLSPACSSLWGQGHQCWPGSPT
Nucleotide Sequence CTGCTGGGACTCCTTCCTTCCTCCCTCCCCTCTGTTTTCAGGCTTGGCCTCCTGGGGGTGTTTCCTGAATCCGACTCCCCAGAGTTTAAAGAGCTAGGTTCCTGGGGACTGGGATTCATACCTCCTTCCCCTCTCTCTCCTGCCTGCTCCTCCCTCTGGGGACAGGGACACCAATGTTGGCCTGGCTCACCCACA
CircID chr8:23019852|23020061
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MCSCWDSFLPPSPLFSGLASWGCFLNPTPQSLKS
Nucleotide Sequence CTGTGCTCCTGCTGGGACTCCTTCCTTCCTCCCTCCCCTCTGTTTTCAGGCTTGGCCTCCTGGGGGTGTTTCCTGAATCCGACTCCCCAGAGTTTAAAGAGCTAG
CircID chr8:23019852|23020061
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MNPSPQEPSSLNSGESDSGNTPRRPSLKTEGREEGRSPSRSTAL
Nucleotide Sequence ATGAATCCCAGTCCCCAGGAACCTAGCTCTTTAAACTCTGGGGAGTCGGATTCAGGAAACACCCCCAGGAGGCCAAGCCTGAAAACAGAGGGGAGGGAGGAAGGAAGGAGTCCCAGCAGGAGCACAGCCCTG
CircID chr8:23019852|23020061
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence LWVSQANIGVPVPRGRSRQEREGKEV
Nucleotide Sequence CTGTGGGTGAGCCAGGCCAACATTGGTGTCCCTGTCCCCAGAGGGAGGAGCAGGCAGGAGAGAGAGGGGAAGGAGGTATGA
CircID chr8:23019852|23020061
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MVSLSPEGGAGRRERGRRYESQSPGT
Nucleotide Sequence TTGGTGTCCCTGTCCCCAGAGGGAGGAGCAGGCAGGAGAGAGAGGGGAAGGAGGTATGAATCCCAGTCCCCAGGAACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab