CircRNA Information

General Information
circRNA Basic Information
CircID chr8:26507894|26508050
Strand -
CircType exon
Host Gene ENSG00000240694.7;
Algorism CIRI2;
Sequence GCCGAGGGATGGCGCGTTTCTCCACCGCTCTCCGGAGCAGGGTTTCTAGCCGTAACACATAGGCTGAGACCTTCTCTCCTTCCTCCTGATAGGTCTTCAGATACCTCACCTGGGCTGTCCTGCGGCTCTCTAGGCTCCCAAACACTTGCTTAAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:26507894|26508050 hsa-let-7b-5p 0 0 1
chr8:26507894|26508050 hsa-let-7b-3p 0 0 1
chr8:26507894|26508050 hsa-let-7c-5p 0 0 1
chr8:26507894|26508050 hsa-let-7c-3p 0 0 1
chr8:26507894|26508050 hsa-let-7d-5p 0 0 1
chr8:26507894|26508050 hsa-let-7d-3p 0 0 1
chr8:26507894|26508050 hsa-let-7e-5p 0 0 1
chr8:26507894|26508050 hsa-let-7e-3p 0 0 1
chr8:26507894|26508050 hsa-miR-98-5p 0 0 1
chr8:26507894|26508050 hsa-miR-98-3p 0 0 1
chr8:26507894|26508050 hsa-let-7g-5p 0 0 1
chr8:26507894|26508050 hsa-let-7g-3p 0 0 1
chr8:26507894|26508050 hsa-let-7i-5p 0 0 1
chr8:26507894|26508050 hsa-let-7i-3p 0 0 1
chr8:26507894|26508050 hsa-miR-185-5p 0 0 1
chr8:26507894|26508050 hsa-miR-185-3p 0 0 1
chr8:26507894|26508050 hsa-miR-202-5p 0 0 1
chr8:26507894|26508050 hsa-miR-202-3p 0 0 1
chr8:26507894|26508050 hsa-miR-493-5p 0 0 1
chr8:26507894|26508050 hsa-miR-493-3p 0 0 1
chr8:26507894|26508050 hsa-miR-523-5p 0 0 1
chr8:26507894|26508050 hsa-miR-523-3p 0 0 1
chr8:26507894|26508050 hsa-miR-920 0 0 1
chr8:26507894|26508050 hsa-miR-1203 0 0 1
chr8:26507894|26508050 hsa-miR-1286 0 1 1
chr8:26507894|26508050 hsa-miR-1294 0 0 1
chr8:26507894|26508050 hsa-miR-125a-3p 1 1 1
chr8:26507894|26508050 hsa-let-7a 0 0 1
chr8:26507894|26508050 hsa-let-7f 0 0 1
chr8:26507894|26508050 hsa-miR-611 1 0 0
chr8:26507894|26508050 hsa-miR-3135a 0 1 0
chr8:26507894|26508050 hsa-miR-4436a 0 1 0
chr8:26507894|26508050 hsa-miR-4476 0 1 0
chr8:26507894|26508050 hsa-miR-4678 0 1 0
chr8:26507894|26508050 hsa-miR-4739 1 0 0
chr8:26507894|26508050 hsa-miR-5685 0 1 0
chr8:26507894|26508050 hsa-miR-5739 0 1 0
chr8:26507894|26508050 hsa-miR-6090 1 0 0
chr8:26507894|26508050 hsa-miR-671-5p 1 0 0
chr8:26507894|26508050 hsa-miR-6894-5p 1 0 0
chr8:26507894|26508050 hsa-miR-766-5p 0 1 0
chr8:26507894|26508050 hsa-miR-6880-5p 0 1 0
chr8:26507894|26508050 hsa-miR-6796-5p 1 0 0
chr8:26507894|26508050 hsa-miR-6827-5p 1 1 0
chr8:26507894|26508050 hsa-miR-1224-5p 1 0 0
chr8:26507894|26508050 hsa-miR-6770-5p 0 1 0
chr8:26507894|26508050 hsa-miR-3667-5p 1 0 0
chr8:26507894|26508050 hsa-miR-6740-5p 1 1 0
chr8:26507894|26508050 hsa-miR-652-5p 1 0 0
chr8:26507894|26508050 hsa-miR-3648 1 0 0
chr8:26507894|26508050 hsa-miR-4638-3p 1 0 0
chr8:26507894|26508050 hsa-miR-6886-5p 0 1 0
chr8:26507894|26508050 hsa-miR-887-5p 0 1 0
chr8:26507894|26508050 hsa-miR-6856-3p 0 1 0
chr8:26507894|26508050 hsa-miR-1343-5p 1 0 0
chr8:26507894|26508050 hsa-miR-6726-5p 1 0 0
chr8:26507894|26508050 hsa-miR-1249-5p 1 1 0
chr8:26507894|26508050 hsa-miR-6797-5p 1 0 0
chr8:26507894|26508050 hsa-miR-5196-5p 1 1 0
chr8:26507894|26508050 hsa-miR-4632-5p 1 1 0
chr8:26507894|26508050 hsa-miR-6738-5p 1 0 0
chr8:26507894|26508050 hsa-miR-3198 1 0 0
chr8:26507894|26508050 hsa-miR-4747-5p 1 1 0
chr8:26507894|26508050 hsa-miR-6876-5p 0 1 0
chr8:26507894|26508050 hsa-miR-4716-3p 0 1 0
chr8:26507894|26508050 hsa-miR-4690-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:26507894|26508050
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRPSLLPPDRSSDTSPGLSCGSLGSQTLA
Nucleotide Sequence CTGAGACCTTCTCTCCTTCCTCCTGATAGGTCTTCAGATACCTCACCTGGGCTGTCCTGCGGCTCTCTAGGCTCCCAAACACTTGCTTAA
CircID chr8:26507894|26508050
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPR
Nucleotide Sequence CTGAAGACCTATCAGGAGGAAGGAGAGAAGGTCTCAGCCTATGTGTTACGGCTAGAAACCCTGCTCCGGAGAGCGGTGGAGAAACGCGCCATCCCTCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab