CircRNA Information

General Information
circRNA Basic Information
CircID chr8:29079205|29079433
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCCTCACGCCACTCCGCCCCCGTGGAATCGTGTTCCATCTAGTGAATACCGATTCATTTCTAAGTCTCTGCTCATGCATGATCGAATTCTCCTGCAACTGCAGGGAGCAGCGCCCACCGGCTTCGCTGTGTCATCCGCAGACACTCACACATGACGGTATCTACATCACCCTGCACTGTCTCTTCATCTGCTTTTGTGGCTCTAAACAGGCTTCTCTAAACTTCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:29079205|29079433 hsa-miR-148a-5p 0 0 1
chr8:29079205|29079433 hsa-miR-148a-3p 0 0 1
chr8:29079205|29079433 hsa-miR-152-5p 0 0 1
chr8:29079205|29079433 hsa-miR-152-3p 0 0 1
chr8:29079205|29079433 hsa-miR-148b-5p 0 0 1
chr8:29079205|29079433 hsa-miR-148b-3p 0 0 1
chr8:29079205|29079433 hsa-miR-346 0 0 1
chr8:29079205|29079433 hsa-miR-425-5p 0 0 1
chr8:29079205|29079433 hsa-miR-425-3p 0 0 1
chr8:29079205|29079433 hsa-miR-632 0 0 1
chr8:29079205|29079433 hsa-miR-541-5p 0 0 1
chr8:29079205|29079433 hsa-miR-541-3p 0 0 1
chr8:29079205|29079433 hsa-miR-1286 0 0 1
chr8:29079205|29079433 hsa-miR-1303 0 0 1
chr8:29079205|29079433 hsa-miR-28-3p 0 0 1
chr8:29079205|29079433 hsa-miR-574-5p 0 0 1
chr8:29079205|29079433 hsa-miR-654-5p 0 0 1
chr8:29079205|29079433 hsa-miR-608 1 0 0
chr8:29079205|29079433 hsa-miR-637 1 0 0
chr8:29079205|29079433 hsa-miR-1183 1 0 0
chr8:29079205|29079433 hsa-miR-1268a 1 0 0
chr8:29079205|29079433 hsa-miR-3196 1 1 0
chr8:29079205|29079433 hsa-miR-3666 1 0 0
chr8:29079205|29079433 hsa-miR-1268b 1 0 0
chr8:29079205|29079433 hsa-miR-4467 1 0 0
chr8:29079205|29079433 hsa-miR-4488 1 0 0
chr8:29079205|29079433 hsa-miR-3960 1 0 0
chr8:29079205|29079433 hsa-miR-4651 1 0 0
chr8:29079205|29079433 hsa-miR-4689 1 1 0
chr8:29079205|29079433 hsa-miR-4706 1 0 0
chr8:29079205|29079433 hsa-miR-6076 1 0 0
chr8:29079205|29079433 hsa-miR-6088 1 0 0
chr8:29079205|29079433 hsa-miR-7704 1 0 0
chr8:29079205|29079433 hsa-miR-10226 0 1 0
chr8:29079205|29079433 hsa-miR-211-3p 1 0 0
chr8:29079205|29079433 hsa-miR-128-3p 0 1 0
chr8:29079205|29079433 hsa-miR-25-5p 0 1 0
chr8:29079205|29079433 hsa-miR-6089 1 0 0
chr8:29079205|29079433 hsa-miR-6744-5p 0 1 0
chr8:29079205|29079433 hsa-miR-4653-3p 1 0 0
chr8:29079205|29079433 hsa-miR-4709-3p 0 1 0
chr8:29079205|29079433 hsa-miR-7845-5p 1 1 0
chr8:29079205|29079433 hsa-miR-3180-3p 1 1 0
chr8:29079205|29079433 hsa-miR-6732-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6805-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6827-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6782-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6850-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6835-5p 1 0 0
chr8:29079205|29079433 hsa-miR-3648 1 0 0
chr8:29079205|29079433 hsa-miR-4787-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6789-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6781-5p 1 0 0
chr8:29079205|29079433 hsa-miR-10400-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6787-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6816-5p 1 0 0
chr8:29079205|29079433 hsa-miR-3180 1 1 0
chr8:29079205|29079433 hsa-miR-5001-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6737-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6752-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6819-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6842-5p 1 0 0
chr8:29079205|29079433 hsa-miR-7110-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6722-3p 1 0 0
chr8:29079205|29079433 hsa-miR-7111-5p 1 0 0
chr8:29079205|29079433 hsa-miR-1237-5p 1 1 0
chr8:29079205|29079433 hsa-miR-1909-3p 1 0 0
chr8:29079205|29079433 hsa-miR-4701-3p 1 0 0
chr8:29079205|29079433 hsa-miR-4726-5p 1 0 0
chr8:29079205|29079433 hsa-miR-4749-5p 1 0 0
chr8:29079205|29079433 hsa-miR-675-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6846-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6848-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6858-5p 1 0 0
chr8:29079205|29079433 hsa-miR-4697-5p 1 1 0
chr8:29079205|29079433 hsa-miR-4758-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6849-5p 1 0 0
chr8:29079205|29079433 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:29079205|29079433
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLMHDRILLQLQGAAPTGFAVSSADTHT
Nucleotide Sequence CTGCTCATGCATGATCGAATTCTCCTGCAACTGCAGGGAGCAGCGCCCACCGGCTTCGCTGTGTCATCCGCAGACACTCACACATGA
CircID chr8:29079205|29079433
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MIEFSCNCREQRPPASLCHPQTLTHDGIYITLHCLFICFCGSKQASLNFR
Nucleotide Sequence ATGATCGAATTCTCCTGCAACTGCAGGGAGCAGCGCCCACCGGCTTCGCTGTGTCATCCGCAGACACTCACACATGACGGTATCTACATCACCCTGCACTGTCTCTTCATCTGCTTTTGTGGCTCTAAACAGGCTTCTCTAAACTTCAGG
CircID chr8:29079205|29079433
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MFRATKADEETVQGDVDTVMCECLRMTQRSRWALLPAVAGEFDHA
Nucleotide Sequence CTGTTTAGAGCCACAAAAGCAGATGAAGAGACAGTGCAGGGTGATGTAGATACCGTCATGTGTGAGTGTCTGCGGATGACACAGCGAAGCCGGTGGGCGCTGCTCCCTGCAGTTGCAGGAGAATTCGATCATGCATGA
CircID chr8:29079205|29079433
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MQLQENSIMHEQRLRNESVFTRWNTIPRGRSGVRK
Nucleotide Sequence CTGCAGTTGCAGGAGAATTCGATCATGCATGAGCAGAGACTTAGAAATGAATCGGTATTCACTAGATGGAACACGATTCCACGGGGGCGGAGTGGCGTGAGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab