CircRNA Information

General Information
circRNA Basic Information
CircID chr8:29334637|29334824
Strand +
CircType exon
Host Gene ENSG00000120875.7;
Algorism CIRI2;
Sequence AGTTCAGGGTGAAGCATGGAGGGTTTCAGTTCCCAGACAATGGAACCATTTAGAGACAACACAGTTGGACATTTCCACTTTTTCCTTGATTCCTGGAAGTCCAGTGGGTTCTGCAGCTGAAAAAGCCCTGGGTCCCAGCAGCAGAGAGACAGGACAGAGGGGATGCTTGGGCGGGGAGGGACGGTAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:29334637|29334824 hsa-miR-422a 0 1 1
chr8:29334637|29334824 hsa-miR-412-5p 0 0 1
chr8:29334637|29334824 hsa-miR-412-3p 0 0 1
chr8:29334637|29334824 hsa-miR-522-5p 0 0 1
chr8:29334637|29334824 hsa-miR-522-3p 0 0 1
chr8:29334637|29334824 hsa-miR-593-5p 0 0 1
chr8:29334637|29334824 hsa-miR-593-3p 0 0 1
chr8:29334637|29334824 hsa-miR-617 0 0 1
chr8:29334637|29334824 hsa-miR-632 0 0 1
chr8:29334637|29334824 hsa-miR-298 0 0 1
chr8:29334637|29334824 hsa-miR-892a 0 0 1
chr8:29334637|29334824 hsa-miR-665 0 0 1
chr8:29334637|29334824 hsa-miR-1231 0 0 1
chr8:29334637|29334824 hsa-miR-1292-5p 0 0 1
chr8:29334637|29334824 hsa-miR-1292-3p 0 0 1
chr8:29334637|29334824 hsa-miR-324-5p 0 1 1
chr8:29334637|29334824 hsa-miR-1207-3p 0 0 1
chr8:29334637|29334824 hsa-miR-378 0 0 1
chr8:29334637|29334824 hsa-miR-623 1 0 0
chr8:29334637|29334824 hsa-miR-637 1 0 0
chr8:29334637|29334824 hsa-miR-1470 1 0 0
chr8:29334637|29334824 hsa-miR-711 0 1 0
chr8:29334637|29334824 hsa-miR-718 1 0 0
chr8:29334637|29334824 hsa-miR-378b 0 1 0
chr8:29334637|29334824 hsa-miR-378c 1 1 0
chr8:29334637|29334824 hsa-miR-4314 0 1 0
chr8:29334637|29334824 hsa-miR-378e 0 1 0
chr8:29334637|29334824 hsa-miR-378f 0 1 0
chr8:29334637|29334824 hsa-miR-4425 1 0 0
chr8:29334637|29334824 hsa-miR-378h 0 1 0
chr8:29334637|29334824 hsa-miR-378i 0 1 0
chr8:29334637|29334824 hsa-miR-5193 1 0 0
chr8:29334637|29334824 hsa-miR-6071 0 1 0
chr8:29334637|29334824 hsa-miR-6749-3p 1 0 0
chr8:29334637|29334824 hsa-miR-18a-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6836-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6892-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6873-3p 0 1 0
chr8:29334637|29334824 hsa-miR-6845-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6760-5p 0 1 0
chr8:29334637|29334824 hsa-miR-6728-3p 1 0 0
chr8:29334637|29334824 hsa-miR-4763-5p 1 0 0
chr8:29334637|29334824 hsa-miR-6763-3p 1 0 0
chr8:29334637|29334824 hsa-miR-7108-3p 1 1 0
chr8:29334637|29334824 hsa-miR-1247-5p 1 0 0
chr8:29334637|29334824 hsa-miR-6803-3p 1 0 0
chr8:29334637|29334824 hsa-miR-7113-3p 1 1 0
chr8:29334637|29334824 hsa-miR-6780a-3p 0 1 0
chr8:29334637|29334824 hsa-miR-4667-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6830-5p 0 1 0
chr8:29334637|29334824 hsa-miR-7843-3p 0 1 0
chr8:29334637|29334824 hsa-miR-339-5p 1 0 0
chr8:29334637|29334824 hsa-miR-7106-3p 1 0 0
chr8:29334637|29334824 hsa-miR-3158-3p 0 1 0
chr8:29334637|29334824 hsa-miR-1224-3p 1 0 0
chr8:29334637|29334824 hsa-miR-2276-5p 0 1 0
chr8:29334637|29334824 hsa-miR-6741-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6752-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6895-3p 0 1 0
chr8:29334637|29334824 hsa-miR-6826-3p 1 1 0
chr8:29334637|29334824 hsa-miR-6773-3p 1 0 0
chr8:29334637|29334824 hsa-miR-328-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6760-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6748-3p 1 0 0
chr8:29334637|29334824 hsa-miR-4433a-5p 1 0 0
chr8:29334637|29334824 hsa-miR-3173-5p 1 0 0
chr8:29334637|29334824 hsa-miR-4433b-5p 1 0 0
chr8:29334637|29334824 hsa-miR-6734-3p 1 0 0
chr8:29334637|29334824 hsa-miR-1249-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6729-3p 0 1 0
chr8:29334637|29334824 hsa-miR-6800-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6510-3p 1 0 0
chr8:29334637|29334824 hsa-miR-3162-3p 1 0 0
chr8:29334637|29334824 hsa-miR-5581-3p 0 1 0
chr8:29334637|29334824 hsa-miR-517-5p 0 1 0
chr8:29334637|29334824 hsa-miR-3127-3p 1 0 0
chr8:29334637|29334824 hsa-miR-4685-3p 1 0 0
chr8:29334637|29334824 hsa-miR-1909-3p 1 0 0
chr8:29334637|29334824 hsa-miR-4685-5p 0 1 0
chr8:29334637|29334824 hsa-miR-4749-5p 1 0 0
chr8:29334637|29334824 hsa-miR-1266-5p 1 0 0
chr8:29334637|29334824 hsa-miR-4646-5p 0 1 0
chr8:29334637|29334824 hsa-miR-378a-3p 0 1 0
chr8:29334637|29334824 hsa-miR-193b-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6756-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6792-3p 1 0 0
chr8:29334637|29334824 hsa-miR-6862-3p 1 0 0
chr8:29334637|29334824 hsa-miR-5009-5p 0 1 0
chr8:29334637|29334824 hsa-miR-10401-3p 1 0 0
chr8:29334637|29334824 hsa-miR-3059-5p 1 0 0
chr8:29334637|29334824 hsa-miR-6764-5p 0 1 0
chr8:29334637|29334824 hsa-miR-6827-3p 1 0 0
chr8:29334637|29334824 hsa-miR-5699-3p 0 1 0
chr8:29334637|29334824 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr8:29334637|29334824
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MEGFSSQTMEPFRDNTVGHFHFFLDSWKSSGFCS
Nucleotide Sequence ATGGAGGGTTTCAGTTCCCAGACAATGGAACCATTTAGAGACAACACAGTTGGACATTTCCACTTTTTCCTTGATTCCTGGAAGTCCAGTGGGTTCTGCAGCTGA

CircID chr8:29334637|29334824
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MDISTFSLIPGSPVGSAAEKALGPSSRETGQRGCLGGEGR
Nucleotide Sequence TTGGACATTTCCACTTTTTCCTTGATTCCTGGAAGTCCAGTGGGTTCTGCAGCTGAAAAAGCCCTGGGTCCCAGCAGCAGAGAGACAGGACAGAGGGGATGCTTGGGCGGGGAGGGACGGTAA

CircID chr8:29334637|29334824
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MEVQWVLQLKKPWVPAAERQDRGDAWAGRDGN
Nucleotide Sequence CTGGAAGTCCAGTGGGTTCTGCAGCTGAAAAAGCCCTGGGTCCCAGCAGCAGAGAGACAGGACAGAGGGGATGCTTGGGCGGGGAGGGACGGTAAC

CircID chr8:29334637|29334824
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MSLCCWDPGLFQLQNPLDFQESRKKWKCPTVLSLNGSIVWELKPSMLHPE
Nucleotide Sequence CTGTCTCTCTGCTGCTGGGACCCAGGGCTTTTTCAGCTGCAGAACCCACTGGACTTCCAGGAATCAAGGAAAAAGTGGAAATGTCCAACTGTGTTGTCTCTAAATGGTTCCATTGTCTGGGAACTGAAACCCTCCATGCTTCACCCTGAA

CircID chr8:29334637|29334824
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MSCLSAAGTQGFFSCRTHWTSRNQGKSGNVQLCCL
Nucleotide Sequence CTGTCCTGTCTCTCTGCTGCTGGGACCCAGGGCTTTTTCAGCTGCAGAACCCACTGGACTTCCAGGAATCAAGGAAAAAGTGGAAATGTCCAACTGTGTTGTCTCTAA

CircID chr8:29334637|29334824
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MLLGPRAFSAAEPTGLPGIKEKVEMSNCVVSKWFHCLGTETLHASP
Nucleotide Sequence CTGCTGCTGGGACCCAGGGCTTTTTCAGCTGCAGAACCCACTGGACTTCCAGGAATCAAGGAAAAAGTGGAAATGTCCAACTGTGTTGTCTCTAAATGGTTCCATTGTCTGGGAACTGAAACCCTCCATGCTTCACCCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites