CircRNA Information

General Information
circRNA Basic Information
CircID chr8:38245742|38249803
Strand +
CircType exon
Host Gene ENSG00000085788.13;
Algorism find_circ;CIRI2;DCC;
Sequence AGATCTGCAGCGAATAACCCTGCCCAGCATTAACCGCCTCAGGCACTTCACCAATGACACAATTCTGGATGTCTTCTTCTACAATAGTCCCACCTACTGTCAGACTATTGTGGACACAGTTGCTTCTGAAATGAACCGAATATACACACTTTTTCTACAGAGGAACCCTGATTTCAAAGGGGGTGTATCCATTGCTGGTCATAGTTTAGGTAACAAAATGAGTTCTGTGTGACCAGAGAAGACTATCACATTTTAAAGACACCTGTTTTTGAAGCACAATGTCTTTTATCAGTATGAAATTCAGAGGTCTAGAAGTGGTCTGTGGTCAGGAAATTTGGAAGGGGTTGGAAGGGTGGCGGTAAATTGGAAAGAAAGACTCCTTGCTGTATAGATTTGCTTACATATGTAATTGGCTTATTTAGTGCTAATGCTTAGAAATTGTCCCTTCTTCTATTTTACTTATAGGTTCGCTTATATTGTTTGATATCCTAACAAATCAGAAAGATTCTTTGGGGGATATTGACAGTGAAAAGGCACTCTAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAATATGCACTGCTGATCTGTTAATAGAGTTATGGAATCATTGAGCTAAATGAAGTTTGCATATGAACAAATGAATGAATTGGCTACAAATTGATATGATTTATAGAAACTCTGTTCGAAAGTATTGGGGACTTGATGTTTAAACATTATTTTAGTAAAAATTCCTATAACCATGTATCATCTGTAGGATTGATTTGGTACCTATTTCTCCTGTTGGACCATGAGTTCCTCCAGAGCAGAGCTTTTGTCTTAGACTATTTTATTTCTATTTCTATTTCTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTGAGACAGTCTCTTGCTCTGTCACCCAGGCTGGAATGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTGCAGGGTTCAAATGATTCTCCTGCTTCAGCCTCCCCAGTAGCTGGGACAGGCGCATGCCACCGTACCCGGCTAATTTTTGTATCTTTAGTAGAGACAGGGTGTTGGTCAGACTGGTCTTGAACTCCTGACCTTGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCATGCCCAGCCTAGACTGTTTTATTTCTTAAGCACTGTTTTCCTAATTTCTTAAGCACTGAGCTCCCTTAAAATTCAGCAAATGTTTGTTAATGATGATGAATATTTTACTAATTTCTTTAAAAACATATTTTCAATTGAAGTTGCAAAACCTTGGAACCTCTTAATTTATATCTTGCATAAATGACAATTTGTTAAAGTTAAGATACATTGCTGTGGAAATCTATGTATTTCTTTACTGCAAAATAGTATTAAAGGAAACTAAATGAATTTCAAGAATATGAGCTTTATAATTTAATTTTTAGGATTCGCTAAATATTGTAATGGATCAAGGAGATACACCTACACTAGAGGAAGATTTGAAGAAACTTCAGCTCTCTGAATTCTTTGATATCTTTGAGAAGGAGAAAGTAGATAAGGAAGCTCTGGGCTTTATGTACAGACCGAGATCTTCAGGAAATAGGAATTCCTTTAGGACCAAGAAAGAAGATATTAAACTATTTCAGCACCAGAAAAAACTCAATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:38245742|38249803 hsa-miR-622 1 1 1
chr8:38245742|38249803 hsa-miR-4739 1 1 1
chr8:38245742|38249803 hsa-miR-146a-3p 1 1 1
chr8:38245742|38249803 hsa-miR-141-5p 1 1 1
chr8:38245742|38249803 hsa-miR-214-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6840-3p 1 1 1
chr8:38245742|38249803 hsa-miR-4700-3p 1 1 1
chr8:38245742|38249803 hsa-miR-3194-3p 1 1 1
chr8:38245742|38249803 hsa-miR-6879-3p 1 1 1
chr8:38245742|38249803 hsa-miR-6765-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6861-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6825-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6894-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6854-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6799-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6089 1 1 1
chr8:38245742|38249803 hsa-miR-4722-5p 1 1 1
chr8:38245742|38249803 hsa-miR-3622b-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6721-5p 1 1 1
chr8:38245742|38249803 hsa-miR-3682-3p 1 1 1
chr8:38245742|38249803 hsa-miR-3663-5p 1 1 1
chr8:38245742|38249803 hsa-miR-2467-3p 1 1 1
chr8:38245742|38249803 hsa-miR-1228-5p 1 1 1
chr8:38245742|38249803 hsa-miR-6826-5p 1 1 1
chr8:38245742|38249803 hsa-miR-616-3p 1 1 1
chr8:38245742|38249803 hsa-miR-6865-3p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:38245742|38249803 U2AF2 16 3 91
chr8:38245742|38249803 MOV10 0 0 1
chr8:38245742|38249803 PRPF8 0 2 11
chr8:38245742|38249803 TNRC6A 0 0 1
chr8:38245742|38249803 NUDT21 0 0 3
chr8:38245742|38249803 TROVE2 1 0 1
chr8:38245742|38249803 DGCR8 1 0 2
chr8:38245742|38249803 EIF3A 0 0 1
chr8:38245742|38249803 GRWD1 0 0 1
chr8:38245742|38249803 PTBP1 0 13 4
chr8:38245742|38249803 DHX9 1 0 5
chr8:38245742|38249803 DDX3X 2 0 2
chr8:38245742|38249803 FXR1 0 0 6
chr8:38245742|38249803 FXR2 0 0 1
chr8:38245742|38249803 GTF2F1 0 0 4
chr8:38245742|38249803 EIF4G2 0 0 1
chr8:38245742|38249803 DDX42 0 0 2
chr8:38245742|38249803 CSTF2T 0 3 9
chr8:38245742|38249803 YWHAG 1 0 0
chr8:38245742|38249803 RNF219 0 0 1
chr8:38245742|38249803 XRN2 0 0 2
chr8:38245742|38249803 UPF1 0 1 1
chr8:38245742|38249803 ELAVL1 8 7 13
chr8:38245742|38249803 ELAVL3 0 1 0
chr8:38245742|38249803 KHDRBS1 1 0 0
chr8:38245742|38249803 CELF2 0 0 1
chr8:38245742|38249803 PUM2 0 0 2
chr8:38245742|38249803 XRCC6 0 0 2
chr8:38245742|38249803 SRSF7 0 0 1
chr8:38245742|38249803 SRSF1 0 0 32
chr8:38245742|38249803 U2AF1 5 0 6
chr8:38245742|38249803 ADAR 0 0 33
chr8:38245742|38249803 KHSRP 2 1 4
chr8:38245742|38249803 SRSF9 0 0 1
chr8:38245742|38249803 DDX54 0 0 9
chr8:38245742|38249803 EFTUD2 0 0 1
chr8:38245742|38249803 PCBP2 0 0 2
chr8:38245742|38249803 SF3A3 0 0 1
chr8:38245742|38249803 ZNF184 1 0 1
chr8:38245742|38249803 LIN28B 1 0 6
chr8:38245742|38249803 FTO 0 0 2
chr8:38245742|38249803 RBFOX2 1 0 2
chr8:38245742|38249803 RBM22 0 0 2
chr8:38245742|38249803 WDR33 0 2 0
chr8:38245742|38249803 AGO1 0 0 1
chr8:38245742|38249803 EIF4A3 1 1 10
chr8:38245742|38249803 AGO2 0 0 7
chr8:38245742|38249803 UCHL5 0 0 1
chr8:38245742|38249803 FAM120A 0 0 3
chr8:38245742|38249803 RPS3 0 0 3
chr8:38245742|38249803 TAF15 0 0 3
chr8:38245742|38249803 GPKOW 0 0 1
chr8:38245742|38249803 FUS 0 1 0
chr8:38245742|38249803 FASTKD2 0 0 1
chr8:38245742|38249803 HNRNPU 0 0 2
chr8:38245742|38249803 ZNF622 0 0 1
chr8:38245742|38249803 HNRNPK 0 2 0
chr8:38245742|38249803 HNRNPL 2 0 0
chr8:38245742|38249803 RBM15 0 0 1
chr8:38245742|38249803 HNRNPC 2 4 34
chr8:38245742|38249803 SUGP2 0 0 2
chr8:38245742|38249803 SMNDC1 1 0 3
chr8:38245742|38249803 HNRNPA1 0 4 35
chr8:38245742|38249803 SND1 0 0 4
chr8:38245742|38249803 IGF2BP1 1 0 9
chr8:38245742|38249803 IGF2BP3 0 0 5
chr8:38245742|38249803 IGF2BP2 7 3 57
chr8:38245742|38249803 HNRNPUL1 0 0 4
chr8:38245742|38249803 TARDBP 1 19 6
chr8:38245742|38249803 STAU1 6 0 0
chr8:38245742|38249803 BUD13 2 1 6
chr8:38245742|38249803 RTCB 0 0 2
chr8:38245742|38249803 FBL 1 2 5
chr8:38245742|38249803 NUMA1 0 0 1
chr8:38245742|38249803 SF3B4 0 0 5
chr8:38245742|38249803 SF3B1 0 0 2
chr8:38245742|38249803 CPSF7 0 0 4
chr8:38245742|38249803 FMR1 1 0 5
chr8:38245742|38249803 CPSF6 0 0 6
chr8:38245742|38249803 TIA1 1 0 0
chr8:38245742|38249803 QKI 0 0 2
chr8:38245742|38249803 NOP58 0 1 6
chr8:38245742|38249803 TARBP2 0 0 32
chr8:38245742|38249803 NOP56 1 1 4
chr8:38245742|38249803 LSM11 0 0 1
chr8:38245742|38249803 HNRNPA2B1 1 0 2
chr8:38245742|38249803 FIP1L1 1 2 3
chr8:38245742|38249803 TRA2A 0 0 5
chr8:38245742|38249803 DDX24 0 0 1
chr8:38245742|38249803 ATXN2 0 0 1
chr8:38245742|38249803 CSTF2 0 5 1
chr8:38245742|38249803 NONO 0 0 1
chr8:38245742|38249803 SUPV3L1 0 0 1
chr8:38245742|38249803 ILF3 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab