CircRNA Information

General Information
circRNA Basic Information
CircID chr8:38264127|38264300
Strand -
CircType exon
Host Gene ENSG00000147535.15;
Algorism CIRI2;
Sequence CTGTTCTCTATTGAGATAGATTCAATTTTTTTTTTTTTTGAGATGGGGTCTCACTCTGTTGCCTAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGGAACCTCCAGCTCCCAGGTTCAAGCAATTCTCCTACCTCAGCCTCCCAGGTAGCTGGGATTACGGCACACAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:38264127|38264300 hsa-let-7b-5p 0 0 1
chr8:38264127|38264300 hsa-let-7b-3p 0 0 1
chr8:38264127|38264300 hsa-let-7c-5p 0 0 1
chr8:38264127|38264300 hsa-let-7c-3p 0 0 1
chr8:38264127|38264300 hsa-let-7d-5p 0 0 1
chr8:38264127|38264300 hsa-let-7d-3p 0 0 1
chr8:38264127|38264300 hsa-let-7e-5p 0 0 1
chr8:38264127|38264300 hsa-let-7e-3p 0 0 1
chr8:38264127|38264300 hsa-miR-98-5p 0 0 1
chr8:38264127|38264300 hsa-miR-98-3p 0 0 1
chr8:38264127|38264300 hsa-let-7g-5p 0 0 1
chr8:38264127|38264300 hsa-let-7g-3p 0 0 1
chr8:38264127|38264300 hsa-let-7i-5p 0 0 1
chr8:38264127|38264300 hsa-let-7i-3p 0 0 1
chr8:38264127|38264300 hsa-miR-202-5p 0 0 1
chr8:38264127|38264300 hsa-miR-202-3p 0 0 1
chr8:38264127|38264300 hsa-miR-619-5p 0 0 1
chr8:38264127|38264300 hsa-miR-619-3p 0 0 1
chr8:38264127|38264300 hsa-miR-766-5p 0 0 1
chr8:38264127|38264300 hsa-miR-766-3p 0 0 1
chr8:38264127|38264300 hsa-miR-920 0 0 1
chr8:38264127|38264300 hsa-miR-302f 0 0 1
chr8:38264127|38264300 hsa-miR-1825 0 0 1
chr8:38264127|38264300 hsa-miR-769-5p 0 0 1
chr8:38264127|38264300 hsa-miR-145-5p 0 0 1
chr8:38264127|38264300 hsa-miR-485-5p 0 0 1
chr8:38264127|38264300 hsa-miR-199a-5p 0 0 1
chr8:38264127|38264300 hsa-miR-490-3p 0 0 1
chr8:38264127|38264300 hsa-miR-508-5p 0 0 1
chr8:38264127|38264300 hsa-miR-199b-5p 0 0 1
chr8:38264127|38264300 hsa-miR-371-5p 0 0 1
chr8:38264127|38264300 hsa-let-7a 0 0 1
chr8:38264127|38264300 hsa-let-7f 0 0 1
chr8:38264127|38264300 hsa-miR-147 0 0 1
chr8:38264127|38264300 hsa-miR-762 1 0 0
chr8:38264127|38264300 hsa-miR-3135a 0 1 0
chr8:38264127|38264300 hsa-miR-4300 0 1 0
chr8:38264127|38264300 hsa-miR-3929 0 1 0
chr8:38264127|38264300 hsa-miR-3135b 0 1 0
chr8:38264127|38264300 hsa-miR-4478 0 1 0
chr8:38264127|38264300 hsa-miR-3689c 0 1 0
chr8:38264127|38264300 hsa-miR-4538 1 0 0
chr8:38264127|38264300 hsa-miR-4656 1 0 0
chr8:38264127|38264300 hsa-miR-4739 1 0 0
chr8:38264127|38264300 hsa-miR-5684 1 1 0
chr8:38264127|38264300 hsa-miR-5787 1 0 0
chr8:38264127|38264300 hsa-miR-6085 1 0 0
chr8:38264127|38264300 hsa-miR-7703 0 1 0
chr8:38264127|38264300 hsa-miR-8078 0 1 0
chr8:38264127|38264300 hsa-miR-12127 0 1 0
chr8:38264127|38264300 hsa-miR-6765-5p 1 0 0
chr8:38264127|38264300 hsa-miR-7106-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6894-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6720-5p 0 1 0
chr8:38264127|38264300 hsa-miR-6799-5p 1 0 0
chr8:38264127|38264300 hsa-miR-7851-3p 1 1 0
chr8:38264127|38264300 hsa-miR-3192-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6746-5p 1 0 0
chr8:38264127|38264300 hsa-miR-7160-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6741-5p 1 0 0
chr8:38264127|38264300 hsa-miR-4655-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6871-5p 0 1 0
chr8:38264127|38264300 hsa-miR-30b-3p 0 1 0
chr8:38264127|38264300 hsa-miR-6852-5p 1 0 0
chr8:38264127|38264300 hsa-miR-1229-5p 1 0 0
chr8:38264127|38264300 hsa-miR-149-3p 1 0 0
chr8:38264127|38264300 hsa-miR-6824-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6802-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6878-5p 0 1 0
chr8:38264127|38264300 hsa-let-7f-5p 0 1 0
chr8:38264127|38264300 hsa-let-7a-5p 0 1 0
chr8:38264127|38264300 hsa-miR-4695-3p 0 1 0
chr8:38264127|38264300 hsa-miR-7112-3p 0 1 0
chr8:38264127|38264300 hsa-miR-500a-5p 1 0 0
chr8:38264127|38264300 hsa-miR-1229-3p 0 1 0
chr8:38264127|38264300 hsa-miR-1273h-5p 0 1 0
chr8:38264127|38264300 hsa-miR-3689b-3p 0 1 0
chr8:38264127|38264300 hsa-miR-4763-3p 1 0 0
chr8:38264127|38264300 hsa-miR-6769b-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6778-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6787-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6870-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6726-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6754-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6756-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6813-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6779-5p 0 1 0
chr8:38264127|38264300 hsa-miR-6780a-5p 1 0 0
chr8:38264127|38264300 hsa-miR-328-5p 1 0 0
chr8:38264127|38264300 hsa-miR-3689a-3p 0 1 0
chr8:38264127|38264300 hsa-miR-6846-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6848-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6858-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6883-5p 1 0 0
chr8:38264127|38264300 hsa-miR-939-5p 1 1 0
chr8:38264127|38264300 hsa-miR-1285-3p 1 1 0
chr8:38264127|38264300 hsa-miR-4646-5p 1 0 0
chr8:38264127|38264300 hsa-miR-4667-5p 1 0 0
chr8:38264127|38264300 hsa-miR-6884-5p 1 1 0
chr8:38264127|38264300 hsa-miR-6807-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:38264127|38264300
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MEPPAPRFKQFSYLSLPGSWDYGTQL
Nucleotide Sequence CTGGAACCTCCAGCTCCCAGGTTCAAGCAATTCTCCTACCTCAGCCTCCCAGGTAGCTGGGATTACGGCACACAACTC
CircID chr8:38264127|38264300
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MRWGLTLLPRLECSGAISAHWNLQLPGSSNSPTSASQVAGITAHN
Nucleotide Sequence TTGAGATGGGGTCTCACTCTGTTGCCTAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGGAACCTCCAGCTCCCAGGTTCAAGCAATTCTCCTACCTCAGCCTCCCAGGTAGCTGGGATTACGGCACACAAC
CircID chr8:38264127|38264300
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MCAVIPATWEAEVGELLEPGSWRFQ
Nucleotide Sequence TTGTGTGCCGTAATCCCAGCTACCTGGGAGGCTGAGGTAGGAGAATTGCTTGAACCTGGGAGCTGGAGGTTCCAGTGA
CircID chr8:38264127|38264300
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MEVPVSRDRTTALQPRQQSETPSQKKKKLNLSQ
Nucleotide Sequence CTGGAGGTTCCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTAGGCAACAGAGTGAGACCCCATCTCAAAAAAAAAAAAAATTGAATCTATCTCAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab