CircRNA Information

General Information
circRNA Basic Information
CircID chr8:41598924|41599193
Strand -
CircType exon
Host Gene ENSG00000158669.10;
Algorism CIRI2;
Sequence CTGGCGTTTGCAGTTGCCTCCTGTGGCCGTGTTTTTCTGTCATTCTGTTCCCAGGCCTTCTATTCAGGCGGTTGAAGGGTGTGGACTTTGGAATGGGGTTTGCTGTTCTTCGGGAACTTGCTTCCTTTCCCTGGCTGGTGCTGTCAGGAAGGACCATCTGAAGGCTGCAATTTGTTCTTAGGGAGGCAGGTGCTGGCCTGGCCTGGATCTTCCACCATGTTCCTGTTGCTGCCTTTTGATAGCCTGATTGTCAACCTTCTGGGCATCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:41598924|41599193 hsa-miR-29a-5p 0 0 1
chr8:41598924|41599193 hsa-miR-29a-3p 0 0 1
chr8:41598924|41599193 hsa-miR-29c-5p 0 0 1
chr8:41598924|41599193 hsa-miR-29c-3p 0 0 1
chr8:41598924|41599193 hsa-miR-484 0 0 1
chr8:41598924|41599193 hsa-miR-545-5p 0 0 1
chr8:41598924|41599193 hsa-miR-545-3p 0 0 1
chr8:41598924|41599193 hsa-miR-563 0 0 1
chr8:41598924|41599193 hsa-miR-650 0 0 1
chr8:41598924|41599193 hsa-miR-661 0 0 1
chr8:41598924|41599193 hsa-miR-1301-5p 0 0 1
chr8:41598924|41599193 hsa-miR-1301-3p 0 0 1
chr8:41598924|41599193 hsa-miR-873-5p 0 0 1
chr8:41598924|41599193 hsa-miR-873-3p 0 0 1
chr8:41598924|41599193 hsa-miR-1226-5p 0 0 1
chr8:41598924|41599193 hsa-miR-1226-3p 0 0 1
chr8:41598924|41599193 hsa-miR-1200 0 0 1
chr8:41598924|41599193 hsa-miR-1292-5p 0 0 1
chr8:41598924|41599193 hsa-miR-1292-3p 0 0 1
chr8:41598924|41599193 hsa-miR-548b-3p 0 0 1
chr8:41598924|41599193 hsa-miR-7 0 0 1
chr8:41598924|41599193 hsa-miR-29b 0 0 1
chr8:41598924|41599193 hsa-miR-198 1 0 0
chr8:41598924|41599193 hsa-miR-640 1 0 0
chr8:41598924|41599193 hsa-miR-1248 0 1 0
chr8:41598924|41599193 hsa-miR-3153 0 1 0
chr8:41598924|41599193 hsa-miR-4298 1 0 0
chr8:41598924|41599193 hsa-miR-3612 0 1 0
chr8:41598924|41599193 hsa-miR-3714 0 1 0
chr8:41598924|41599193 hsa-miR-4427 0 1 0
chr8:41598924|41599193 hsa-miR-4526 0 1 0
chr8:41598924|41599193 hsa-miR-4683 0 1 0
chr8:41598924|41599193 hsa-miR-6081 1 0 0
chr8:41598924|41599193 hsa-miR-6745 1 0 0
chr8:41598924|41599193 hsa-miR-8089 1 0 0
chr8:41598924|41599193 hsa-miR-6747-3p 0 1 0
chr8:41598924|41599193 hsa-miR-4665-3p 1 0 0
chr8:41598924|41599193 hsa-miR-6894-5p 1 1 0
chr8:41598924|41599193 hsa-miR-1972 0 1 0
chr8:41598924|41599193 hsa-miR-1236-5p 1 1 0
chr8:41598924|41599193 hsa-miR-4695-5p 1 1 0
chr8:41598924|41599193 hsa-miR-6744-5p 1 0 0
chr8:41598924|41599193 hsa-miR-4722-5p 1 0 0
chr8:41598924|41599193 hsa-miR-593-5p 1 1 0
chr8:41598924|41599193 hsa-miR-3190-3p 0 1 0
chr8:41598924|41599193 hsa-miR-6810-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6858-3p 0 1 0
chr8:41598924|41599193 hsa-miR-4640-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6749-5p 1 0 0
chr8:41598924|41599193 hsa-miR-5585-3p 0 1 0
chr8:41598924|41599193 hsa-miR-6828-5p 0 1 0
chr8:41598924|41599193 hsa-miR-5584-5p 0 1 0
chr8:41598924|41599193 hsa-miR-3065-3p 0 1 0
chr8:41598924|41599193 hsa-miR-6869-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6826-5p 0 1 0
chr8:41598924|41599193 hsa-miR-6804-3p 1 1 0
chr8:41598924|41599193 hsa-miR-4773 0 1 0
chr8:41598924|41599193 hsa-miR-6778-3p 0 1 0
chr8:41598924|41599193 hsa-miR-3614-3p 0 1 0
chr8:41598924|41599193 hsa-miR-4746-5p 1 0 0
chr8:41598924|41599193 hsa-miR-676-5p 0 1 0
chr8:41598924|41599193 hsa-miR-1233-5p 1 1 0
chr8:41598924|41599193 hsa-miR-7107-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6879-5p 1 0 0
chr8:41598924|41599193 hsa-miR-7111-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6735-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6511a-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6739-5p 0 1 0
chr8:41598924|41599193 hsa-miR-10398-3p 0 1 0
chr8:41598924|41599193 hsa-miR-4646-5p 0 1 0
chr8:41598924|41599193 hsa-miR-6750-5p 1 0 0
chr8:41598924|41599193 hsa-miR-6859-5p 0 1 0
chr8:41598924|41599193 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:41598924|41599193
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MEWGLLFFGNLLPFPGWCCQEGPSEGCNLFLGRQVLAWPGSSTMFLLLPFDSLIVNLLGIS
Nucleotide Sequence TTGGAATGGGGTTTGCTGTTCTTCGGGAACTTGCTTCCTTTCCCTGGCTGGTGCTGTCAGGAAGGACCATCTGAAGGCTGCAATTTGTTCTTAGGGAGGCAGGTGCTGGCCTGGCCTGGATCTTCCACCATGTTCCTGTTGCTGCCTTTTGATAGCCTGATTGTCAACCTTCTGGGCATCTCC
CircID chr8:41598924|41599193
ORF Type ORF2
Protein Length 57
Nucleotide Length 174
Protein Sequence MQLPPVAVFFCHSVPRPSIQAVEGCGLWNGVCCSSGTCFLSLAGAVRKDHLKAAICS
Nucleotide Sequence TTGCAGTTGCCTCCTGTGGCCGTGTTTTTCTGTCATTCTGTTCCCAGGCCTTCTATTCAGGCGGTTGAAGGGTGTGGACTTTGGAATGGGGTTTGCTGTTCTTCGGGAACTTGCTTCCTTTCCCTGGCTGGTGCTGTCAGGAAGGACCATCTGAAGGCTGCAATTTGTTCTTAG
CircID chr8:41598924|41599193
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MWPCFSVILFPGLLFRRLKGVDFGMGFAVLRELASFPWLVLSGRTI
Nucleotide Sequence CTGTGGCCGTGTTTTTCTGTCATTCTGTTCCCAGGCCTTCTATTCAGGCGGTTGAAGGGTGTGGACTTTGGAATGGGGTTTGCTGTTCTTCGGGAACTTGCTTCCTTTCCCTGGCTGGTGCTGTCAGGAAGGACCATCTGA
CircID chr8:41598924|41599193
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MTAPARERKQVPEEQQTPFQSPHPSTA
Nucleotide Sequence CTGACAGCACCAGCCAGGGAAAGGAAGCAAGTTCCCGAAGAACAGCAAACCCCATTCCAAAGTCCACACCCTTCAACCGCCTGA
CircID chr8:41598924|41599193
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MPRRLTIRLSKGSNRNMVEDPGQASTCLPKNKLQPSDGPS
Nucleotide Sequence ATGCCCAGAAGGTTGACAATCAGGCTATCAAAAGGCAGCAACAGGAACATGGTGGAAGATCCAGGCCAGGCCAGCACCTGCCTCCCTAAGAACAAATTGCAGCCTTCAGATGGTCCTTCCTGA
CircID chr8:41598924|41599193
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MVLPDSTSQGKEASSRRTANPIPKSTPFNRLNRRPGNRMTEKHGHRRQLQTP
Nucleotide Sequence ATGGTCCTTCCTGACAGCACCAGCCAGGGAAAGGAAGCAAGTTCCCGAAGAACAGCAAACCCCATTCCAAAGTCCACACCCTTCAACCGCCTGAATAGAAGGCCTGGGAACAGAATGACAGAAAAACACGGCCACAGGAGGCAACTGCAAACGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab