CircRNA Information

General Information
circRNA Basic Information
CircID chr8:41621233|41621356
Strand +
CircType exon
Host Gene ENSG00000158669.10;
Algorism CIRI2;
Sequence CGCCATCTCTAGCACAAGACCATGGCCACATCTCCCCAACCACTCAGCCCGCACAGCGTGCAAAGGTGGGGAGTTCACTTTAATGGCATTCCTCCAACGACTTATTGTAAAAGAAACAAGGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:41621233|41621356 hsa-miR-17-5p 0 0 1
chr8:41621233|41621356 hsa-miR-17-3p 0 0 1
chr8:41621233|41621356 hsa-miR-20a-5p 0 0 1
chr8:41621233|41621356 hsa-miR-20a-3p 0 0 1
chr8:41621233|41621356 hsa-miR-93-5p 0 0 1
chr8:41621233|41621356 hsa-miR-93-3p 0 0 1
chr8:41621233|41621356 hsa-miR-106a-5p 0 0 1
chr8:41621233|41621356 hsa-miR-106a-3p 0 0 1
chr8:41621233|41621356 hsa-miR-106b-5p 0 0 1
chr8:41621233|41621356 hsa-miR-106b-3p 0 0 1
chr8:41621233|41621356 hsa-miR-20b-5p 0 0 1
chr8:41621233|41621356 hsa-miR-20b-3p 0 0 1
chr8:41621233|41621356 hsa-miR-519d-5p 0 0 1
chr8:41621233|41621356 hsa-miR-519d-3p 0 0 1
chr8:41621233|41621356 hsa-miR-507 0 0 1
chr8:41621233|41621356 hsa-miR-557 1 1 1
chr8:41621233|41621356 hsa-miR-581 0 0 1
chr8:41621233|41621356 hsa-miR-765 0 0 1
chr8:41621233|41621356 hsa-miR-147b-5p 0 0 1
chr8:41621233|41621356 hsa-miR-147b-3p 0 0 1
chr8:41621233|41621356 hsa-miR-939-5p 0 0 1
chr8:41621233|41621356 hsa-miR-939-3p 0 0 1
chr8:41621233|41621356 hsa-miR-663b 1 0 1
chr8:41621233|41621356 hsa-miR-1306-5p 0 0 1
chr8:41621233|41621356 hsa-miR-1306-3p 0 0 1
chr8:41621233|41621356 hsa-miR-140-5p 0 0 1
chr8:41621233|41621356 hsa-miR-1224-3p 0 0 1
chr8:41621233|41621356 hsa-miR-532-5p 0 0 1
chr8:41621233|41621356 hsa-miR-576-3p 0 0 1
chr8:41621233|41621356 hsa-miR-338-5p 0 0 1
chr8:41621233|41621356 hsa-miR-218 0 0 1
chr8:41621233|41621356 hsa-miR-768-5p 0 0 1
chr8:41621233|41621356 hsa-miR-1182 1 0 0
chr8:41621233|41621356 hsa-miR-4322 1 0 0
chr8:41621233|41621356 hsa-miR-4466 1 0 0
chr8:41621233|41621356 hsa-miR-4481 1 0 0
chr8:41621233|41621356 hsa-miR-1587 1 0 0
chr8:41621233|41621356 hsa-miR-4656 1 1 0
chr8:41621233|41621356 hsa-miR-4657 1 0 0
chr8:41621233|41621356 hsa-miR-4734 1 0 0
chr8:41621233|41621356 hsa-miR-4741 1 0 0
chr8:41621233|41621356 hsa-miR-5787 1 0 0
chr8:41621233|41621356 hsa-miR-6081 1 0 0
chr8:41621233|41621356 hsa-miR-8077 0 1 0
chr8:41621233|41621356 hsa-miR-12131 1 0 0
chr8:41621233|41621356 hsa-miR-92a-1-5p 0 1 0
chr8:41621233|41621356 hsa-miR-3150a-3p 0 1 0
chr8:41621233|41621356 hsa-miR-6825-5p 1 0 0
chr8:41621233|41621356 hsa-miR-4474-3p 1 0 0
chr8:41621233|41621356 hsa-miR-3187-3p 1 1 0
chr8:41621233|41621356 hsa-miR-8069 1 0 0
chr8:41621233|41621356 hsa-miR-7108-5p 1 0 0
chr8:41621233|41621356 hsa-miR-7109-5p 1 0 0
chr8:41621233|41621356 hsa-miR-149-3p 1 0 0
chr8:41621233|41621356 hsa-miR-6824-5p 1 0 0
chr8:41621233|41621356 hsa-miR-616-3p 1 0 0
chr8:41621233|41621356 hsa-miR-2277-5p 1 0 0
chr8:41621233|41621356 hsa-miR-1233-5p 1 0 0
chr8:41621233|41621356 hsa-miR-6812-5p 1 0 0
chr8:41621233|41621356 hsa-miR-6756-5p 1 0 0
chr8:41621233|41621356 hsa-miR-6763-5p 0 1 0
chr8:41621233|41621356 hsa-miR-3620-5p 1 0 0
chr8:41621233|41621356 hsa-miR-3689a-3p 1 0 0
chr8:41621233|41621356 hsa-miR-6848-5p 1 0 0
chr8:41621233|41621356 hsa-miR-4758-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:41621233|41621356
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MATSPQPLSPHSVQRWGVHFNGIPPTTYCKRNKA
Nucleotide Sequence ATGGCCACATCTCCCCAACCACTCAGCCCGCACAGCGTGCAAAGGTGGGGAGTTCACTTTAATGGCATTCCTCCAACGACTTATTGTAAAAGAAACAAGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab