CircRNA Information

General Information
circRNA Basic Information
CircID chr8:41654465|41654702
Strand +
CircType exon
Host Gene ENSG00000029534.18;
Algorism CIRI2;
Sequence CAATAGAAACATTTAGCAGTACGTACAGAGCCTGACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGGAGTAGGGCTAGTGAATGTATCTGCCAGGTCTTAGAAGTCAGGACCACCCAGGGTCTCCCAGAGTGAACTTGGTGCTCTAAGTCCAGGCAGCCTGCAGGCTGGGGACCCTGGGTGCAGGTGCCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:41654465|41654702 hsa-miR-29a-5p 0 0 1
chr8:41654465|41654702 hsa-miR-29a-3p 0 0 1
chr8:41654465|41654702 hsa-miR-181c-5p 0 0 1
chr8:41654465|41654702 hsa-miR-181c-3p 0 0 1
chr8:41654465|41654702 hsa-miR-29c-5p 0 0 1
chr8:41654465|41654702 hsa-miR-29c-3p 0 0 1
chr8:41654465|41654702 hsa-miR-326 0 0 1
chr8:41654465|41654702 hsa-miR-422a 0 1 1
chr8:41654465|41654702 hsa-miR-484 0 0 1
chr8:41654465|41654702 hsa-miR-181d-5p 0 0 1
chr8:41654465|41654702 hsa-miR-181d-3p 0 0 1
chr8:41654465|41654702 hsa-miR-504-5p 0 0 1
chr8:41654465|41654702 hsa-miR-504-3p 0 0 1
chr8:41654465|41654702 hsa-miR-558 0 0 1
chr8:41654465|41654702 hsa-miR-596 0 1 1
chr8:41654465|41654702 hsa-miR-617 0 0 1
chr8:41654465|41654702 hsa-miR-631 0 1 1
chr8:41654465|41654702 hsa-miR-661 0 0 1
chr8:41654465|41654702 hsa-miR-298 0 0 1
chr8:41654465|41654702 hsa-miR-708-5p 0 0 1
chr8:41654465|41654702 hsa-miR-708-3p 0 0 1
chr8:41654465|41654702 hsa-miR-760 1 0 1
chr8:41654465|41654702 hsa-miR-1237-5p 0 0 1
chr8:41654465|41654702 hsa-miR-1237-3p 0 0 1
chr8:41654465|41654702 hsa-miR-1205 0 1 1
chr8:41654465|41654702 hsa-miR-1293 0 1 1
chr8:41654465|41654702 hsa-miR-1248 0 0 1
chr8:41654465|41654702 hsa-miR-1184 0 0 1
chr8:41654465|41654702 hsa-miR-28-5p 0 0 1
chr8:41654465|41654702 hsa-miR-330-5p 0 0 1
chr8:41654465|41654702 hsa-miR-323-5p 0 0 1
chr8:41654465|41654702 hsa-miR-378 0 0 1
chr8:41654465|41654702 hsa-miR-181a 0 0 1
chr8:41654465|41654702 hsa-miR-181b 0 0 1
chr8:41654465|41654702 hsa-miR-1254 0 0 1
chr8:41654465|41654702 hsa-miR-129-3p 0 0 1
chr8:41654465|41654702 hsa-miR-29b 0 0 1
chr8:41654465|41654702 hsa-miR-1291 1 0 0
chr8:41654465|41654702 hsa-miR-378b 0 1 0
chr8:41654465|41654702 hsa-miR-548v 0 1 0
chr8:41654465|41654702 hsa-miR-3155a 1 1 0
chr8:41654465|41654702 hsa-miR-3188 1 0 0
chr8:41654465|41654702 hsa-miR-378c 0 1 0
chr8:41654465|41654702 hsa-miR-4292 0 1 0
chr8:41654465|41654702 hsa-miR-3935 0 1 0
chr8:41654465|41654702 hsa-miR-378e 0 1 0
chr8:41654465|41654702 hsa-miR-378f 0 1 0
chr8:41654465|41654702 hsa-miR-378h 0 1 0
chr8:41654465|41654702 hsa-miR-3155b 1 1 0
chr8:41654465|41654702 hsa-miR-378i 0 1 0
chr8:41654465|41654702 hsa-miR-4656 1 0 0
chr8:41654465|41654702 hsa-miR-4730 1 0 0
chr8:41654465|41654702 hsa-miR-4734 1 0 0
chr8:41654465|41654702 hsa-miR-378j 0 1 0
chr8:41654465|41654702 hsa-miR-8057 1 0 0
chr8:41654465|41654702 hsa-miR-8058 0 1 0
chr8:41654465|41654702 hsa-miR-8073 0 1 0
chr8:41654465|41654702 hsa-miR-323a-5p 0 1 0
chr8:41654465|41654702 hsa-miR-3192-5p 0 1 0
chr8:41654465|41654702 hsa-miR-23b-5p 0 1 0
chr8:41654465|41654702 hsa-miR-6849-3p 0 1 0
chr8:41654465|41654702 hsa-miR-6871-5p 0 1 0
chr8:41654465|41654702 hsa-miR-6868-3p 0 1 0
chr8:41654465|41654702 hsa-miR-3944-3p 1 0 0
chr8:41654465|41654702 hsa-miR-6757-3p 1 0 0
chr8:41654465|41654702 hsa-miR-3667-3p 0 1 0
chr8:41654465|41654702 hsa-miR-3690 0 1 0
chr8:41654465|41654702 hsa-miR-378a-5p 0 1 0
chr8:41654465|41654702 hsa-miR-6736-3p 0 1 0
chr8:41654465|41654702 hsa-miR-6742-3p 0 1 0
chr8:41654465|41654702 hsa-miR-6868-5p 0 1 0
chr8:41654465|41654702 hsa-miR-328-3p 1 1 0
chr8:41654465|41654702 hsa-miR-3124-3p 0 1 0
chr8:41654465|41654702 hsa-miR-4717-5p 0 1 0
chr8:41654465|41654702 hsa-miR-3173-5p 0 1 0
chr8:41654465|41654702 hsa-miR-221-5p 0 1 0
chr8:41654465|41654702 hsa-miR-4524b-3p 0 1 0
chr8:41654465|41654702 hsa-miR-6813-5p 0 1 0
chr8:41654465|41654702 hsa-miR-320a-5p 0 1 0
chr8:41654465|41654702 hsa-miR-30c-1-3p 0 1 0
chr8:41654465|41654702 hsa-miR-378a-3p 0 1 0
chr8:41654465|41654702 hsa-miR-10394-5p 1 1 0
chr8:41654465|41654702 hsa-miR-6764-5p 0 1 0
chr8:41654465|41654702 hsa-miR-6811-5p 0 1 0
chr8:41654465|41654702 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:41654465|41654702
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MTAQLLRTSAAAGEGAVACLSVKEEGKE
Nucleotide Sequence CTGACAGCGCAGCTCCTGAGGACTTCTGCGGCTGCAGGAGAAGGAGCTGTGGCCTGTCTTTCAGTGAAAGAGGAAGGAAAGGAGTAG
CircID chr8:41654465|41654702
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MDLEHQVHSGRPWVVLTSKTWQIHSLALLLSFLFH
Nucleotide Sequence CTGGACTTAGAGCACCAAGTTCACTCTGGGAGACCCTGGGTGGTCCTGACTTCTAAGACCTGGCAGATACATTCACTAGCCCTACTCCTTTCCTTCCTCTTTCACTGA
CircID chr8:41654465|41654702
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MHPGSPACRLPGLRAPSSLWETLGGPDF
Nucleotide Sequence CTGCACCCAGGGTCCCCAGCCTGCAGGCTGCCTGGACTTAGAGCACCAAGTTCACTCTGGGAGACCCTGGGTGGTCCTGACTTCTAA
CircID chr8:41654465|41654702
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MADTFTSPTPFLPLSLKDRPQLLLLQPQKSSGAALSGSVRTAKCFY
Nucleotide Sequence CTGGCAGATACATTCACTAGCCCTACTCCTTTCCTTCCTCTTTCACTGAAAGACAGGCCACAGCTCCTTCTCCTGCAGCCGCAGAAGTCCTCAGGAGCTGCGCTGTCAGGCTCTGTACGTACTGCTAAATGTTTCTAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab