CircRNA Information

General Information
circRNA Basic Information
CircID chr8:42322076|42322401
Strand +
CircType exon
Host Gene ENSG00000104365.12;
Algorism CIRI2;
Sequence CTCTTCCACCTTGGGCAACAGTTCCAGCGCCTTCTGCTTGCAAACCACAGTTTTACTGCAAAGAATAAACATGGCAAACTAATGGCATTTGGGCTGGAGAAAGCAGAACCTGTGGCAGCTGTGCATCCAGTCAGCAGCTGCAGAAACTCTCTTCATGAGGTCCAGCGAATCAGAGAGGAGGGAGGAAGGTGACCTCATACCTGCATCTCCCAGTCCTTCCTCCAGAGCAGGAAGGTCGGGGCTCATACCTGAGCTGCGTATAGATCACTCGCACTTTCTTCTCGAAGCTCTGAATTGCCTGAAGCAGCAGCCGTACCATTTCCTGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:42322076|42322401 hsa-miR-17-5p 0 0 1
chr8:42322076|42322401 hsa-miR-17-3p 0 0 1
chr8:42322076|42322401 hsa-miR-20a-5p 0 0 1
chr8:42322076|42322401 hsa-miR-20a-3p 0 0 1
chr8:42322076|42322401 hsa-miR-22-5p 0 0 1
chr8:42322076|42322401 hsa-miR-22-3p 0 0 1
chr8:42322076|42322401 hsa-miR-93-5p 0 0 1
chr8:42322076|42322401 hsa-miR-93-3p 0 0 1
chr8:42322076|42322401 hsa-miR-106a-5p 0 0 1
chr8:42322076|42322401 hsa-miR-106a-3p 0 0 1
chr8:42322076|42322401 hsa-miR-106b-5p 0 0 1
chr8:42322076|42322401 hsa-miR-106b-3p 0 0 1
chr8:42322076|42322401 hsa-miR-370-5p 0 0 1
chr8:42322076|42322401 hsa-miR-370-3p 0 0 1
chr8:42322076|42322401 hsa-miR-20b-5p 0 0 1
chr8:42322076|42322401 hsa-miR-20b-3p 0 0 1
chr8:42322076|42322401 hsa-miR-492 0 0 1
chr8:42322076|42322401 hsa-miR-519d-5p 0 0 1
chr8:42322076|42322401 hsa-miR-519d-3p 0 0 1
chr8:42322076|42322401 hsa-miR-522-5p 0 0 1
chr8:42322076|42322401 hsa-miR-522-3p 0 0 1
chr8:42322076|42322401 hsa-miR-639 0 0 1
chr8:42322076|42322401 hsa-miR-657 0 0 1
chr8:42322076|42322401 hsa-miR-1301-5p 0 0 1
chr8:42322076|42322401 hsa-miR-1301-3p 0 0 1
chr8:42322076|42322401 hsa-miR-766-5p 0 0 1
chr8:42322076|42322401 hsa-miR-766-3p 0 0 1
chr8:42322076|42322401 hsa-miR-765 1 0 1
chr8:42322076|42322401 hsa-miR-298 0 1 1
chr8:42322076|42322401 hsa-miR-873-5p 0 0 1
chr8:42322076|42322401 hsa-miR-873-3p 0 0 1
chr8:42322076|42322401 hsa-miR-1205 0 0 1
chr8:42322076|42322401 hsa-miR-548e-5p 0 0 1
chr8:42322076|42322401 hsa-miR-548e-3p 0 0 1
chr8:42322076|42322401 hsa-miR-1243 0 0 1
chr8:42322076|42322401 hsa-miR-1253 0 0 1
chr8:42322076|42322401 hsa-miR-548g-5p 0 0 1
chr8:42322076|42322401 hsa-miR-548g-3p 0 0 1
chr8:42322076|42322401 hsa-miR-1284 0 0 1
chr8:42322076|42322401 hsa-miR-1225-3p 0 0 1
chr8:42322076|42322401 hsa-miR-1184 0 1 1
chr8:42322076|42322401 hsa-miR-556-5p 0 0 1
chr8:42322076|42322401 hsa-miR-628-5p 0 0 1
chr8:42322076|42322401 hsa-miR-524-3p 0 0 1
chr8:42322076|42322401 hsa-miR-525-3p 0 0 1
chr8:42322076|42322401 hsa-miR-515-5p 0 0 1
chr8:42322076|42322401 hsa-miR-548a-3p 0 0 1
chr8:42322076|42322401 hsa-miR-450b-5p 0 0 1
chr8:42322076|42322401 hsa-miR-105 0 0 1
chr8:42322076|42322401 hsa-miR-1233 0 0 1
chr8:42322076|42322401 hsa-miR-7 0 0 1
chr8:42322076|42322401 hsa-miR-548f 0 0 1
chr8:42322076|42322401 hsa-miR-516b 0 0 1
chr8:42322076|42322401 hsa-miR-544 0 0 1
chr8:42322076|42322401 hsa-miR-1245 0 0 1
chr8:42322076|42322401 hsa-miR-718 1 0 0
chr8:42322076|42322401 hsa-miR-3183 0 1 0
chr8:42322076|42322401 hsa-miR-3185 0 1 0
chr8:42322076|42322401 hsa-miR-4476 0 1 0
chr8:42322076|42322401 hsa-miR-4515 0 1 0
chr8:42322076|42322401 hsa-miR-4660 0 1 0
chr8:42322076|42322401 hsa-miR-4765 0 1 0
chr8:42322076|42322401 hsa-miR-5047 0 1 0
chr8:42322076|42322401 hsa-miR-5093 1 1 0
chr8:42322076|42322401 hsa-miR-5193 0 1 0
chr8:42322076|42322401 hsa-miR-5685 0 1 0
chr8:42322076|42322401 hsa-miR-6075 0 1 0
chr8:42322076|42322401 hsa-miR-9718 0 1 0
chr8:42322076|42322401 hsa-miR-12114 1 0 0
chr8:42322076|42322401 hsa-miR-12124 0 1 0
chr8:42322076|42322401 hsa-miR-6749-3p 1 0 0
chr8:42322076|42322401 hsa-miR-152-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4708-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6854-5p 0 1 0
chr8:42322076|42322401 hsa-miR-3192-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4709-3p 0 1 0
chr8:42322076|42322401 hsa-miR-4722-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6817-3p 0 1 0
chr8:42322076|42322401 hsa-miR-6787-3p 1 0 0
chr8:42322076|42322401 hsa-miR-6829-5p 1 0 0
chr8:42322076|42322401 hsa-miR-3667-3p 1 1 0
chr8:42322076|42322401 hsa-miR-6516-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4667-3p 0 1 0
chr8:42322076|42322401 hsa-miR-7154-5p 0 1 0
chr8:42322076|42322401 hsa-miR-516b-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4732-3p 0 1 0
chr8:42322076|42322401 hsa-miR-6880-3p 0 1 0
chr8:42322076|42322401 hsa-miR-518c-5p 0 1 0
chr8:42322076|42322401 hsa-miR-5197-3p 0 1 0
chr8:42322076|42322401 hsa-miR-3124-3p 1 0 0
chr8:42322076|42322401 hsa-miR-6734-3p 1 0 0
chr8:42322076|42322401 hsa-miR-6788-5p 0 1 0
chr8:42322076|42322401 hsa-miR-6780b-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4685-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6848-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6858-5p 1 0 0
chr8:42322076|42322401 hsa-miR-1266-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6511b-5p 1 1 0
chr8:42322076|42322401 hsa-miR-6731-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6856-5p 1 0 0
chr8:42322076|42322401 hsa-miR-6876-5p 0 1 0
chr8:42322076|42322401 hsa-miR-4723-3p 0 1 0
chr8:42322076|42322401 hsa-miR-6512-3p 0 1 0
chr8:42322076|42322401 hsa-miR-4768-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:42322076|42322401
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MLANHSFTAKNKHGKLMAFGLEKAEPVAAVHPVSSCRNSLHEVQRIREEGGR
Nucleotide Sequence CTGCTTGCAAACCACAGTTTTACTGCAAAGAATAAACATGGCAAACTAATGGCATTTGGGCTGGAGAAAGCAGAACCTGTGGCAGCTGTGCATCCAGTCAGCAGCTGCAGAAACTCTCTTCATGAGGTCCAGCGAATCAGAGAGGAGGGAGGAAGGTGA
CircID chr8:42322076|42322401
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MGWRKQNLWQLCIQSAAAETLFMRSSESERREEGDLIPASPSPSSRAGRSGLIPELRIDHSHFLLEALNCLKQQPYHFL
Nucleotide Sequence TTGGGCTGGAGAAAGCAGAACCTGTGGCAGCTGTGCATCCAGTCAGCAGCTGCAGAAACTCTCTTCATGAGGTCCAGCGAATCAGAGAGGAGGGAGGAAGGTGACCTCATACCTGCATCTCCCAGTCCTTCCTCCAGAGCAGGAAGGTCGGGGCTCATACCTGAGCTGCGTATAGATCACTCGCACTTTCTTCTCGAAGCTCTGAATTGCCTGAAGCAGCAGCCGTACCATTTCCTG
CircID chr8:42322076|42322401
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MQLLTGCTAATGSAFSSPNAISLPCLFFAVKLWFASRRRWNCCPRWK
Nucleotide Sequence CTGCAGCTGCTGACTGGATGCACAGCTGCCACAGGTTCTGCTTTCTCCAGCCCAAATGCCATTAGTTTGCCATGTTTATTCTTTGCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAG
CircID chr8:42322076|42322401
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MVRLLLQAIQSFEKKVRVIYTQLRYEPRPSCSGGRTGRCRYEVTFLPPL
Nucleotide Sequence ATGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGGTATGAGCCCCGACCTTCCTGCTCTGGAGGAAGGACTGGGAGATGCAGGTATGAGGTCACCTTCCTCCCTCCTCTCTGA
CircID chr8:42322076|42322401
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MDAQLPQVLLSPAQMPLVCHVYSLQ
Nucleotide Sequence CTGGATGCACAGCTGCCACAGGTTCTGCTTTCTCCAGCCCAAATGCCATTAGTTTGCCATGTTTATTCTTTGCAGTAA
CircID chr8:42322076|42322401
ORF Type ORF6
Protein Length 55
Nucleotide Length 168
Protein Sequence MSPDLPALEEGLGDAGMRSPSSLLSDSLDLMKRVSAAADWMHSCHRFCFLQPKCH
Nucleotide Sequence ATGAGCCCCGACCTTCCTGCTCTGGAGGAAGGACTGGGAGATGCAGGTATGAGGTCACCTTCCTCCCTCCTCTCTGATTCGCTGGACCTCATGAAGAGAGTTTCTGCAGCTGCTGACTGGATGCACAGCTGCCACAGGTTCTGCTTTCTCCAGCCCAAATGCCATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab