CircRNA Information

General Information
circRNA Basic Information
CircID chr8:42957094|42964474
Strand +
CircType exon
Host Gene ENSG00000168172.8;
Algorism find_circ;CIRI2;DCC;
Sequence CTGATGAGTAAAGAATCTCCTGTCTCTGCTGGAAATGATGCCTATGTTGACCTTGATCGTCAGCTGAAGAAAACTACAGAGGAACTAAATGAAGCTTTGTCAGCAAAGGAAGAAATTGCTCAAAGATGCCATGAACTGGATATGCAGGCAGTTTTTGTATTGTTGTAAAGAAATACCCAAGGCTGCATAATTTATAAAGAAAAAAGACGTTTAATTGGCTCACGGTTCTGCAGGCTTTCCAGCATGGCTCCAGCATCTGCTTCTGGTTGCAGCATTGCAGGAAGAGAAAAGTAGTTTGTTGGCAGAGAATCAGGTATTAATGGAAAGACTCAATCAATCTGATTCTATAGAAGACCCTAACAGTCCAGCAGGAAGAAGGCATTTGCAGCTCCAGACTCAATTAGAACAGCTCCAAGAAGAAACATTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:42957094|42964474 hsa-miR-107 1 1 1
chr8:42957094|42964474 hsa-miR-192-5p 0 0 1
chr8:42957094|42964474 hsa-miR-192-3p 0 0 1
chr8:42957094|42964474 hsa-miR-181c-5p 0 0 1
chr8:42957094|42964474 hsa-miR-181c-3p 0 0 1
chr8:42957094|42964474 hsa-miR-212-5p 0 0 1
chr8:42957094|42964474 hsa-miR-212-3p 0 0 1
chr8:42957094|42964474 hsa-miR-214-5p 0 0 1
chr8:42957094|42964474 hsa-miR-214-3p 0 0 1
chr8:42957094|42964474 hsa-miR-215-5p 0 0 1
chr8:42957094|42964474 hsa-miR-215-3p 0 0 1
chr8:42957094|42964474 hsa-miR-132-5p 0 0 1
chr8:42957094|42964474 hsa-miR-132-3p 0 0 1
chr8:42957094|42964474 hsa-miR-186-5p 0 0 1
chr8:42957094|42964474 hsa-miR-186-3p 0 0 1
chr8:42957094|42964474 hsa-miR-494-5p 0 0 1
chr8:42957094|42964474 hsa-miR-494-3p 0 0 1
chr8:42957094|42964474 hsa-miR-181d-5p 0 0 1
chr8:42957094|42964474 hsa-miR-181d-3p 0 0 1
chr8:42957094|42964474 hsa-miR-545-5p 0 0 1
chr8:42957094|42964474 hsa-miR-545-3p 0 0 1
chr8:42957094|42964474 hsa-miR-593-5p 0 0 1
chr8:42957094|42964474 hsa-miR-593-3p 0 0 1
chr8:42957094|42964474 hsa-miR-657 0 0 1
chr8:42957094|42964474 hsa-miR-1301-5p 0 0 1
chr8:42957094|42964474 hsa-miR-1301-3p 0 0 1
chr8:42957094|42964474 hsa-miR-543 0 0 1
chr8:42957094|42964474 hsa-miR-1178-5p 0 0 1
chr8:42957094|42964474 hsa-miR-1178-3p 0 0 1
chr8:42957094|42964474 hsa-miR-1286 0 0 1
chr8:42957094|42964474 hsa-miR-1287-5p 0 0 1
chr8:42957094|42964474 hsa-miR-1287-3p 0 0 1
chr8:42957094|42964474 hsa-miR-1243 0 0 1
chr8:42957094|42964474 hsa-miR-548n 0 0 1
chr8:42957094|42964474 hsa-miR-302f 0 0 1
chr8:42957094|42964474 hsa-miR-1322 0 0 1
chr8:42957094|42964474 hsa-miR-127-5p 0 0 1
chr8:42957094|42964474 hsa-miR-1207-3p 0 0 1
chr8:42957094|42964474 hsa-miR-875-3p 0 0 1
chr8:42957094|42964474 hsa-miR-1244 0 1 1
chr8:42957094|42964474 hsa-miR-338-3p 0 0 1
chr8:42957094|42964474 hsa-miR-455-3p 0 0 1
chr8:42957094|42964474 hsa-miR-103 0 0 1
chr8:42957094|42964474 hsa-miR-181a 0 0 1
chr8:42957094|42964474 hsa-miR-181b 0 0 1
chr8:42957094|42964474 hsa-miR-198 1 0 0
chr8:42957094|42964474 hsa-miR-650 1 0 0
chr8:42957094|42964474 hsa-miR-765 1 0 0
chr8:42957094|42964474 hsa-miR-936 0 1 0
chr8:42957094|42964474 hsa-miR-1183 1 0 0
chr8:42957094|42964474 hsa-miR-3125 0 1 0
chr8:42957094|42964474 hsa-miR-3185 1 1 0
chr8:42957094|42964474 hsa-miR-4306 1 0 0
chr8:42957094|42964474 hsa-miR-3621 1 0 0
chr8:42957094|42964474 hsa-miR-3665 1 0 0
chr8:42957094|42964474 hsa-miR-3916 0 1 0
chr8:42957094|42964474 hsa-miR-4421 0 1 0
chr8:42957094|42964474 hsa-miR-4471 0 1 0
chr8:42957094|42964474 hsa-miR-4530 0 1 0
chr8:42957094|42964474 hsa-miR-4533 1 0 0
chr8:42957094|42964474 hsa-miR-4644 1 0 0
chr8:42957094|42964474 hsa-miR-4660 0 1 0
chr8:42957094|42964474 hsa-miR-4689 1 0 0
chr8:42957094|42964474 hsa-miR-4751 1 0 0
chr8:42957094|42964474 hsa-miR-5047 0 1 0
chr8:42957094|42964474 hsa-miR-5695 0 1 0
chr8:42957094|42964474 hsa-miR-6090 1 0 0
chr8:42957094|42964474 hsa-miR-6165 0 1 0
chr8:42957094|42964474 hsa-miR-8060 1 0 0
chr8:42957094|42964474 hsa-miR-8085 1 0 0
chr8:42957094|42964474 hsa-miR-12121 1 0 0
chr8:42957094|42964474 hsa-miR-3692-5p 0 1 0
chr8:42957094|42964474 hsa-miR-6746-5p 1 0 0
chr8:42957094|42964474 hsa-miR-4722-5p 1 0 0
chr8:42957094|42964474 hsa-miR-3928-3p 1 1 0
chr8:42957094|42964474 hsa-miR-197-5p 1 0 0
chr8:42957094|42964474 hsa-miR-6798-5p 1 0 0
chr8:42957094|42964474 hsa-miR-6760-5p 1 1 0
chr8:42957094|42964474 hsa-miR-2467-3p 1 1 0
chr8:42957094|42964474 hsa-miR-1226-5p 1 0 0
chr8:42957094|42964474 hsa-miR-185-5p 1 1 0
chr8:42957094|42964474 hsa-miR-6847-5p 1 1 0
chr8:42957094|42964474 hsa-miR-3202 1 1 0
chr8:42957094|42964474 hsa-miR-4743-3p 0 1 0
chr8:42957094|42964474 hsa-miR-103a-3p 1 1 0
chr8:42957094|42964474 hsa-miR-3616-3p 0 1 0
chr8:42957094|42964474 hsa-miR-3925-5p 0 1 0
chr8:42957094|42964474 hsa-miR-7154-5p 0 1 0
chr8:42957094|42964474 hsa-miR-6878-5p 0 1 0
chr8:42957094|42964474 hsa-miR-584-3p 0 1 0
chr8:42957094|42964474 hsa-miR-605-3p 0 1 0
chr8:42957094|42964474 hsa-miR-7158-5p 0 1 0
chr8:42957094|42964474 hsa-miR-3688-3p 0 1 0
chr8:42957094|42964474 hsa-miR-1207-5p 1 0 0
chr8:42957094|42964474 hsa-miR-6893-5p 1 0 0
chr8:42957094|42964474 hsa-miR-11181-3p 1 0 0
chr8:42957094|42964474 hsa-miR-6511b-5p 1 0 0
chr8:42957094|42964474 hsa-miR-3085-5p 1 0 0
chr8:42957094|42964474 hsa-miR-6731-5p 1 1 0
chr8:42957094|42964474 hsa-miR-6856-5p 1 0 0
chr8:42957094|42964474 hsa-miR-6876-5p 1 1 0
chr8:42957094|42964474 hsa-miR-6859-5p 0 1 0
chr8:42957094|42964474 hsa-miR-3619-5p 1 1 0
chr8:42957094|42964474 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr8:42957094|42964474
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MPTNYFSLPAMLQPAYPVHGIFEQFLPLLTKLHLVPL
Nucleotide Sequence CTGCCAACAAACTACTTTTCTCTTCCTGCAATGCTGCAACCTGCATATCCAGTTCATGGCATCTTTGAGCAATTTCTTCCTTTGCTGACAAAGCTTCATTTAGTTCCTCTGTAG

CircID chr8:42957094|42964474
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSLELQMPSSCWTVRVFYRIRLIESFH
Nucleotide Sequence TTGAGTCTGGAGCTGCAAATGCCTTCTTCCTGCTGGACTGTTAGGGTCTTCTATAGAATCAGATTGATTGAGTCTTTCCATTAA

CircID chr8:42957094|42964474
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MILCQQTTFLFLQCCNLHIQFMASLSNFFLC
Nucleotide Sequence CTGATTCTCTGCCAACAAACTACTTTTCTCTTCCTGCAATGCTGCAACCTGCATATCCAGTTCATGGCATCTTTGAGCAATTTCTTCCTTTGCTGA

CircID chr8:42957094|42964474
ORF Type ORF4
Protein Length 103
Nucleotide Length 309
Protein Sequence LMSKESPVSAGNDAYVDLDRQLKKTTEELNEALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVLMERLNQSDSIEDPNSPAGRRHLQLQTQLEQLQEETF
Nucleotide Sequence CTGATGAGTAAAGAATCTCCTGTCTCTGCTGGAAATGATGCCTATGTTGACCTTGATCGTCAGCTGAAGAAAACTACAGAGGAACTAAATGAAGCTTTGTCAGCAAAGGAAGAAATTGCTCAAAGATGCCATGAACTGGATATGCAGGTTGCAGCATTGCAGGAAGAGAAAAGTAGTTTGTTGGCAGAGAATCAGGTATTAATGGAAAGACTCAATCAATCTGATTCTATAGAAGACCCTAACAGTCCAGCAGGAAGAAGGCATTTGCAGCTCCAGACTCAATTAGAACAGCTCCAAGAAGAAACATTC

CircID chr8:42957094|42964474
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MKLCQQRKKLLKDAMNWICRLQHCRKRKVVCWQRIRY
Nucleotide Sequence ATGAAGCTTTGTCAGCAAAGGAAGAAATTGCTCAAAGATGCCATGAACTGGATATGCAGGTTGCAGCATTGCAGGAAGAGAAAAGTAGTTTGTTGGCAGAGAATCAGGTATTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:42957094|42964474 NOP56 1 2 0
chr8:42957094|42964474 ELAVL1 3 0 0
chr8:42957094|42964474 ELAVL3 1 0 0
chr8:42957094|42964474 FKBP4 0 0 1
chr8:42957094|42964474 PRPF8 0 1 3
chr8:42957094|42964474 UPF1 0 0 1
chr8:42957094|42964474 TAF15 0 1 0
chr8:42957094|42964474 FMR1 0 3 4
chr8:42957094|42964474 CPSF6 0 1 0
chr8:42957094|42964474 FUS 0 1 0
chr8:42957094|42964474 QKI 0 0 1
chr8:42957094|42964474 SRSF1 0 1 7
chr8:42957094|42964474 NOP58 0 1 3
chr8:42957094|42964474 RBM27 0 0 1
chr8:42957094|42964474 U2AF1 1 0 0
chr8:42957094|42964474 U2AF2 8 0 0
chr8:42957094|42964474 SRSF9 0 0 1
chr8:42957094|42964474 DDX54 0 0 7
chr8:42957094|42964474 LSM11 0 0 1
chr8:42957094|42964474 HNRNPM 0 0 1
chr8:42957094|42964474 HNRNPC 3 0 1
chr8:42957094|42964474 TRA2A 0 0 9
chr8:42957094|42964474 ZNF184 0 0 3
chr8:42957094|42964474 DDX3X 0 0 1
chr8:42957094|42964474 MSI2 0 0 1
chr8:42957094|42964474 IGF2BP1 1 0 0
chr8:42957094|42964474 IGF2BP2 1 4 7
chr8:42957094|42964474 TARDBP 5 2 2
chr8:42957094|42964474 BUD13 0 2 5
chr8:42957094|42964474 RBFOX2 2 0 1
chr8:42957094|42964474 EIF4G2 2 0 0
chr8:42957094|42964474 CSTF2T 0 0 3
chr8:42957094|42964474 TARBP2 0 0 1
chr8:42957094|42964474 DDX6 0 0 1
chr8:42957094|42964474 EIF4A3 2 0 7
chr8:42957094|42964474 FBL 0 0 4