CircRNA Information

General Information
circRNA Basic Information
CircID chr8:54143690|54143938
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCAGTGGTGTCCGTGCTGCTCCTGCAAGGCTGGCTGTGATCTGCACCAGCTCTTGTCCCTCCTGGTGTTCCCCTGCTCCCTCCATTCCCTTACTGGCCACCGGGTTTGGCCTTCCTCCATACACCGAGCCCTGTGTACTGTGTACTTCAGCCTCGGCCTCTGCTGTTCCTCCTGCCTGGAGCTTCCCCCACTTGGAATATTCATGGCTTTGGGCCCCACTGTTCCAGGTCTCTGCTTATTAGGAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:54143690|54143938 hsa-miR-15a-5p 0 0 1
chr8:54143690|54143938 hsa-miR-15a-3p 0 0 1
chr8:54143690|54143938 hsa-miR-15b-5p 0 0 1
chr8:54143690|54143938 hsa-miR-15b-3p 0 0 1
chr8:54143690|54143938 hsa-miR-195-5p 0 0 1
chr8:54143690|54143938 hsa-miR-195-3p 0 0 1
chr8:54143690|54143938 hsa-miR-335-5p 0 0 1
chr8:54143690|54143938 hsa-miR-335-3p 0 0 1
chr8:54143690|54143938 hsa-miR-424-5p 0 0 1
chr8:54143690|54143938 hsa-miR-424-3p 0 0 1
chr8:54143690|54143938 hsa-miR-497-5p 0 0 1
chr8:54143690|54143938 hsa-miR-497-3p 0 0 1
chr8:54143690|54143938 hsa-miR-619-5p 0 0 1
chr8:54143690|54143938 hsa-miR-619-3p 0 0 1
chr8:54143690|54143938 hsa-miR-625-5p 0 0 1
chr8:54143690|54143938 hsa-miR-625-3p 0 0 1
chr8:54143690|54143938 hsa-miR-631 0 0 1
chr8:54143690|54143938 hsa-miR-765 0 0 1
chr8:54143690|54143938 hsa-miR-665 0 0 1
chr8:54143690|54143938 hsa-miR-922 0 1 1
chr8:54143690|54143938 hsa-miR-940 0 0 1
chr8:54143690|54143938 hsa-miR-1286 0 0 1
chr8:54143690|54143938 hsa-miR-1275 0 0 1
chr8:54143690|54143938 hsa-miR-769-5p 0 0 1
chr8:54143690|54143938 hsa-miR-423-3p 0 1 1
chr8:54143690|54143938 hsa-miR-485-5p 0 0 1
chr8:54143690|54143938 hsa-miR-509-3-5p 0 0 1
chr8:54143690|54143938 hsa-miR-509-5p 0 0 1
chr8:54143690|54143938 hsa-miR-16 0 0 1
chr8:54143690|54143938 hsa-miR-220c 0 0 1
chr8:54143690|54143938 hsa-miR-138 0 0 1
chr8:54143690|54143938 hsa-miR-101 0 0 1
chr8:54143690|54143938 hsa-miR-638 1 0 0
chr8:54143690|54143938 hsa-miR-650 1 0 0
chr8:54143690|54143938 hsa-miR-658 1 0 0
chr8:54143690|54143938 hsa-miR-762 1 0 0
chr8:54143690|54143938 hsa-miR-920 1 0 0
chr8:54143690|54143938 hsa-miR-936 1 0 0
chr8:54143690|54143938 hsa-miR-1268a 1 0 0
chr8:54143690|54143938 hsa-miR-548q 0 1 0
chr8:54143690|54143938 hsa-miR-3138 1 0 0
chr8:54143690|54143938 hsa-miR-3154 1 0 0
chr8:54143690|54143938 hsa-miR-3188 1 0 0
chr8:54143690|54143938 hsa-miR-4298 1 0 0
chr8:54143690|54143938 hsa-miR-4270 1 0 0
chr8:54143690|54143938 hsa-miR-4271 1 0 0
chr8:54143690|54143938 hsa-miR-3661 0 1 0
chr8:54143690|54143938 hsa-miR-3907 1 0 0
chr8:54143690|54143938 hsa-miR-3929 0 1 0
chr8:54143690|54143938 hsa-miR-1268b 1 0 0
chr8:54143690|54143938 hsa-miR-4466 1 0 0
chr8:54143690|54143938 hsa-miR-4478 1 0 0
chr8:54143690|54143938 hsa-miR-4487 0 1 0
chr8:54143690|54143938 hsa-miR-4488 1 0 0
chr8:54143690|54143938 hsa-miR-4510 1 1 0
chr8:54143690|54143938 hsa-miR-4514 0 1 0
chr8:54143690|54143938 hsa-miR-4533 1 0 0
chr8:54143690|54143938 hsa-miR-4534 1 0 0
chr8:54143690|54143938 hsa-miR-3960 1 0 0
chr8:54143690|54143938 hsa-miR-4656 1 0 0
chr8:54143690|54143938 hsa-miR-4669 1 0 0
chr8:54143690|54143938 hsa-miR-4672 0 1 0
chr8:54143690|54143938 hsa-miR-4673 1 1 0
chr8:54143690|54143938 hsa-miR-4688 1 1 0
chr8:54143690|54143938 hsa-miR-4692 0 1 0
chr8:54143690|54143938 hsa-miR-4721 1 0 0
chr8:54143690|54143938 hsa-miR-4739 1 1 0
chr8:54143690|54143938 hsa-miR-4779 0 1 0
chr8:54143690|54143938 hsa-miR-5090 1 0 0
chr8:54143690|54143938 hsa-miR-5787 1 0 0
chr8:54143690|54143938 hsa-miR-6081 1 1 0
chr8:54143690|54143938 hsa-miR-6085 1 0 0
chr8:54143690|54143938 hsa-miR-6090 1 0 0
chr8:54143690|54143938 hsa-miR-6127 1 1 0
chr8:54143690|54143938 hsa-miR-6129 1 1 0
chr8:54143690|54143938 hsa-miR-6132 1 0 0
chr8:54143690|54143938 hsa-miR-6133 1 1 0
chr8:54143690|54143938 hsa-miR-7150 1 0 0
chr8:54143690|54143938 hsa-miR-8060 1 0 0
chr8:54143690|54143938 hsa-miR-8082 1 0 0
chr8:54143690|54143938 hsa-miR-12115 1 0 0
chr8:54143690|54143938 hsa-miR-12120 0 1 0
chr8:54143690|54143938 hsa-miR-211-3p 1 0 0
chr8:54143690|54143938 hsa-miR-128-3p 0 1 0
chr8:54143690|54143938 hsa-miR-4433b-3p 1 0 0
chr8:54143690|54143938 hsa-miR-504-3p 1 0 0
chr8:54143690|54143938 hsa-miR-7155-5p 1 0 0
chr8:54143690|54143938 hsa-miR-671-5p 1 0 0
chr8:54143690|54143938 hsa-miR-7106-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6825-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6894-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1972 0 1 0
chr8:54143690|54143938 hsa-miR-6510-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6728-5p 1 0 0
chr8:54143690|54143938 hsa-miR-766-5p 0 1 0
chr8:54143690|54143938 hsa-miR-3663-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6515-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6089 1 1 0
chr8:54143690|54143938 hsa-miR-6757-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6873-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6880-5p 1 0 0
chr8:54143690|54143938 hsa-miR-7847-3p 1 0 0
chr8:54143690|54143938 hsa-miR-4695-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6746-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4722-5p 1 1 0
chr8:54143690|54143938 hsa-miR-3928-3p 0 1 0
chr8:54143690|54143938 hsa-miR-6727-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6721-5p 1 0 0
chr8:54143690|54143938 hsa-miR-7845-5p 1 1 0
chr8:54143690|54143938 hsa-miR-491-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6716-5p 1 1 0
chr8:54143690|54143938 hsa-miR-3151-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1292-5p 1 0 0
chr8:54143690|54143938 hsa-miR-503-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6772-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6827-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6798-5p 1 0 0
chr8:54143690|54143938 hsa-miR-3126-5p 1 1 0
chr8:54143690|54143938 hsa-miR-486-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6760-5p 1 0 0
chr8:54143690|54143938 hsa-miR-2467-3p 1 1 0
chr8:54143690|54143938 hsa-miR-3194-5p 0 1 0
chr8:54143690|54143938 hsa-miR-5008-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6786-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6835-5p 1 0 0
chr8:54143690|54143938 hsa-miR-5088-5p 1 1 0
chr8:54143690|54143938 hsa-miR-7109-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1226-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4640-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6771-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4690-5p 1 0 0
chr8:54143690|54143938 hsa-miR-149-3p 1 1 0
chr8:54143690|54143938 hsa-miR-6824-5p 1 0 0
chr8:54143690|54143938 hsa-miR-3162-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6781-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6877-5p 1 0 0
chr8:54143690|54143938 hsa-miR-194-3p 0 1 0
chr8:54143690|54143938 hsa-miR-6892-5p 1 1 0
chr8:54143690|54143938 hsa-miR-7112-5p 1 0 0
chr8:54143690|54143938 hsa-miR-423-5p 0 1 0
chr8:54143690|54143938 hsa-miR-584-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6792-5p 1 1 0
chr8:54143690|54143938 hsa-miR-1296-3p 0 1 0
chr8:54143690|54143938 hsa-miR-490-5p 1 1 0
chr8:54143690|54143938 hsa-miR-3177-5p 1 0 0
chr8:54143690|54143938 hsa-miR-5585-5p 0 1 0
chr8:54143690|54143938 hsa-miR-16-5p 0 1 0
chr8:54143690|54143938 hsa-miR-1207-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1233-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4763-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6778-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6787-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6812-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6865-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6870-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6893-5p 1 1 0
chr8:54143690|54143938 hsa-miR-1343-5p 1 0 0
chr8:54143690|54143938 hsa-miR-5001-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6726-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6743-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6754-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6756-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6803-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6813-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6842-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6851-5p 1 0 0
chr8:54143690|54143938 hsa-miR-10401-5p 1 0 0
chr8:54143690|54143938 hsa-miR-11181-3p 1 0 0
chr8:54143690|54143938 hsa-miR-1249-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6722-3p 1 1 0
chr8:54143690|54143938 hsa-miR-6797-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6808-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6875-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6879-5p 1 0 0
chr8:54143690|54143938 hsa-miR-7111-5p 1 0 0
chr8:54143690|54143938 hsa-miR-186-3p 0 1 0
chr8:54143690|54143938 hsa-miR-4728-5p 1 0 0
chr8:54143690|54143938 hsa-miR-5196-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6780b-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6836-5p 1 0 0
chr8:54143690|54143938 hsa-miR-10396b-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1237-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1909-3p 1 1 0
chr8:54143690|54143938 hsa-miR-4632-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4685-5p 1 1 0
chr8:54143690|54143938 hsa-miR-4725-3p 1 0 0
chr8:54143690|54143938 hsa-miR-4745-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6735-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6794-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6795-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6846-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6848-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6887-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4723-5p 1 1 0
chr8:54143690|54143938 hsa-miR-939-5p 1 1 0
chr8:54143690|54143938 hsa-miR-6511a-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6511b-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6731-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1914-3p 1 0 0
chr8:54143690|54143938 hsa-miR-4665-5p 1 1 0
chr8:54143690|54143938 hsa-miR-3173-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6891-5p 1 0 0
chr8:54143690|54143938 hsa-miR-4716-3p 1 0 0
chr8:54143690|54143938 hsa-miR-6750-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6822-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6859-5p 1 0 0
chr8:54143690|54143938 hsa-miR-3619-5p 1 0 0
chr8:54143690|54143938 hsa-miR-128-2-5p 1 0 0
chr8:54143690|54143938 hsa-miR-1301-5p 1 0 0
chr8:54143690|54143938 hsa-miR-6838-5p 0 1 0
chr8:54143690|54143938 hsa-miR-21-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr8:54143690|54143938
ORF Type ORF1
Protein Length 83
Nucleotide Length 249
Protein Sequence LQWCPCCSCKAGCDLHQLLSLLVFPCSLHSLTGHRVWPSSIHRALCTVYFSLGLCCSSCLELPPLGIFMALGPTVPGLCLLGD
Nucleotide Sequence CTGCAGTGGTGTCCGTGCTGCTCCTGCAAGGCTGGCTGTGATCTGCACCAGCTCTTGTCCCTCCTGGTGTTCCCCTGCTCCCTCCATTCCCTTACTGGCCACCGGGTTTGGCCTTCCTCCATACACCGAGCCCTGTGTACTGTGTACTTCAGCCTCGGCCTCTGCTGTTCCTCCTGCCTGGAGCTTCCCCCACTTGGAATATTCATGGCTTTGGGCCCCACTGTTCCAGGTCTCTGCTTATTAGGAGAT
CircID chr8:54143690|54143938
ORF Type ORF2
Protein Length 70
Nucleotide Length 213
Protein Sequence MAVICTSSCPSWCSPAPSIPLLATGFGLPPYTEPCVLCTSASASAVPPAWSFPHLEYSWLWAPLFQVSAY
Nucleotide Sequence CTGGCTGTGATCTGCACCAGCTCTTGTCCCTCCTGGTGTTCCCCTGCTCCCTCCATTCCCTTACTGGCCACCGGGTTTGGCCTTCCTCCATACACCGAGCCCTGTGTACTGTGTACTTCAGCCTCGGCCTCTGCTGTTCCTCCTGCCTGGAGCTTCCCCCACTTGGAATATTCATGGCTTTGGGCCCCACTGTTCCAGGTCTCTGCTTATTAG
CircID chr8:54143690|54143938
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MLPPFPYWPPGLAFLHTPSPVYCVLQPRPLLFLLPGASPTWNIHGFGPHCSRSLLIRR
Nucleotide Sequence CTGCTCCCTCCATTCCCTTACTGGCCACCGGGTTTGGCCTTCCTCCATACACCGAGCCCTGTGTACTGTGTACTTCAGCCTCGGCCTCTGCTGTTCCTCCTGCCTGGAGCTTCCCCCACTTGGAATATTCATGGCTTTGGGCCCCACTGTTCCAGGTCTCTGCTTATTAGGAGA
CircID chr8:54143690|54143938
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MEGAGEHQEGQELVQITASLAGAARTPLQ
Nucleotide Sequence ATGGAGGGAGCAGGGGAACACCAGGAGGGACAAGAGCTGGTGCAGATCACAGCCAGCCTTGCAGGAGCAGCACGGACACCACTGCAG
CircID chr8:54143690|54143938
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MNIPSGGSSRQEEQQRPRLKYTVHRARCMEEGQTRWPVREWREQGNTRRDKSWCRSQPALQEQHGHHC
Nucleotide Sequence ATGAATATTCCAAGTGGGGGAAGCTCCAGGCAGGAGGAACAGCAGAGGCCGAGGCTGAAGTACACAGTACACAGGGCTCGGTGTATGGAGGAAGGCCAAACCCGGTGGCCAGTAAGGGAATGGAGGGAGCAGGGGAACACCAGGAGGGACAAGAGCTGGTGCAGATCACAGCCAGCCTTGCAGGAGCAGCACGGACACCACTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab