CircRNA Information

General Information
circRNA Basic Information
CircID chr8:58599558|58599797
Strand +
CircType exon
Host Gene ENSG00000035681.6;
Algorism CIRI2;
Sequence AAGGAGGACAGATGGTTGACGACGTGGAGCTTCCCCCTTGGGCTTCCAGTGAGTCCCCCCTTGGAGGTGTTGTATTATAGACATGCTTTACCAAGTAGTGCAATTTCAGTAATTATTTTATTGCTTAGATTTTTAAAAATCACAATATAATTCTCTAAATAAGGATATATGAGCCCTATTCCATATCAGAAGTATTCTATGAGTCTGTGATGTAAAAACATTAATATATATTTGAGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:58599558|58599797 hsa-miR-25-5p 0 0 1
chr8:58599558|58599797 hsa-miR-25-3p 0 0 1
chr8:58599558|58599797 hsa-miR-32-5p 0 0 1
chr8:58599558|58599797 hsa-miR-32-3p 0 0 1
chr8:58599558|58599797 hsa-miR-363-5p 0 0 1
chr8:58599558|58599797 hsa-miR-363-3p 0 0 1
chr8:58599558|58599797 hsa-miR-367-5p 0 0 1
chr8:58599558|58599797 hsa-miR-367-3p 0 0 1
chr8:58599558|58599797 hsa-miR-374a-5p 0 0 1
chr8:58599558|58599797 hsa-miR-374a-3p 0 0 1
chr8:58599558|58599797 hsa-miR-376b-5p 0 0 1
chr8:58599558|58599797 hsa-miR-376b-3p 0 0 1
chr8:58599558|58599797 hsa-miR-92b-5p 0 0 1
chr8:58599558|58599797 hsa-miR-92b-3p 0 0 1
chr8:58599558|58599797 hsa-miR-625-5p 0 0 1
chr8:58599558|58599797 hsa-miR-625-3p 0 0 1
chr8:58599558|58599797 hsa-miR-655-5p 0 0 1
chr8:58599558|58599797 hsa-miR-655-3p 0 0 1
chr8:58599558|58599797 hsa-miR-656-5p 0 0 1
chr8:58599558|58599797 hsa-miR-656-3p 0 0 1
chr8:58599558|58599797 hsa-miR-890 0 0 1
chr8:58599558|58599797 hsa-miR-190b-5p 0 0 1
chr8:58599558|58599797 hsa-miR-190b-3p 0 0 1
chr8:58599558|58599797 hsa-miR-374b-5p 0 0 1
chr8:58599558|58599797 hsa-miR-374b-3p 0 0 1
chr8:58599558|58599797 hsa-miR-1303 0 0 1
chr8:58599558|58599797 hsa-miR-671-5p 1 1 1
chr8:58599558|58599797 hsa-miR-501-5p 0 0 1
chr8:58599558|58599797 hsa-miR-409-3p 0 0 1
chr8:58599558|58599797 hsa-miR-362-5p 0 0 1
chr8:58599558|58599797 hsa-miR-548c-3p 0 0 1
chr8:58599558|58599797 hsa-miR-369-3p 0 0 1
chr8:58599558|58599797 hsa-miR-371-5p 0 0 1
chr8:58599558|58599797 hsa-miR-376a 0 0 1
chr8:58599558|58599797 hsa-miR-499-3p 0 0 1
chr8:58599558|58599797 hsa-miR-190 0 0 1
chr8:58599558|58599797 hsa-miR-92a 0 0 1
chr8:58599558|58599797 hsa-miR-6825-5p 1 0 0
chr8:58599558|58599797 hsa-miR-6821-5p 1 0 0
chr8:58599558|58599797 hsa-miR-5088-5p 1 0 0
chr8:58599558|58599797 hsa-miR-1304-3p 0 1 0
chr8:58599558|58599797 hsa-miR-4774-5p 0 1 0
chr8:58599558|58599797 hsa-miR-6814-5p 1 1 0
chr8:58599558|58599797 hsa-miR-6505-5p 1 1 0
chr8:58599558|58599797 hsa-miR-10396b-5p 1 0 0
chr8:58599558|58599797 hsa-miR-328-5p 1 0 0
chr8:58599558|58599797 hsa-miR-4725-3p 0 1 0
chr8:58599558|58599797 hsa-miR-6794-5p 1 0 0
chr8:58599558|58599797 hsa-miR-6795-5p 1 1 0
chr8:58599558|58599797 hsa-miR-6887-5p 0 1 0
chr8:58599558|58599797 hsa-miR-6885-5p 1 0 0
chr8:58599558|58599797 hsa-miR-939-5p 1 0 0
chr8:58599558|58599797 hsa-miR-4716-3p 0 1 0
chr8:58599558|58599797 hsa-miR-548aq-5p 0 1 0
chr8:58599558|58599797 hsa-miR-374c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:58599558|58599797
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MTTWSFPLGLPVSPPLEVLYYRHALPSSAISVIILLLRFLKITI
Nucleotide Sequence TTGACGACGTGGAGCTTCCCCCTTGGGCTTCCAGTGAGTCCCCCCTTGGAGGTGTTGTATTATAGACATGCTTTACCAAGTAGTGCAATTTCAGTAATTATTTTATTGCTTAGATTTTTAAAAATCACAATATAA
CircID chr8:58599558|58599797
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MSIIQHLQGGTHWKPKGEAPRRQPSVLL
Nucleotide Sequence ATGTCTATAATACAACACCTCCAAGGGGGGACTCACTGGAAGCCCAAGGGGGAAGCTCCACGTCGTCAACCATCTGTCCTCCTT
CircID chr8:58599558|58599797
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKLHYLVKHVYNTTPPRGDSLEAQGGSSTSSTICPP
Nucleotide Sequence CTGAAATTGCACTACTTGGTAAAGCATGTCTATAATACAACACCTCCAAGGGGGGACTCACTGGAAGCCCAAGGGGGAAGCTCCACGTCGTCAACCATCTGTCCTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab