CircRNA Information

General Information
circRNA Basic Information
CircID chr8:61569853|61570065
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCACACTGATCATGATGCTGGCATGGCCTTCTATCATATATTCATATACTGGCTCTTCTGTATAGGTATCAGCTCCTTGTGAGTTTTGTTATAGTGAGTTAACTCCCCAGAATATGAATGTTGATAGATAACTTTGCAAAACACAGAGTTCTAGACCTGAGAGTCCTTTCAAAACCATCTACAGATGTTCACTGACTTTCGACGGGTTTACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:61569853|61570065 hsa-miR-30a-5p 0 0 1
chr8:61569853|61570065 hsa-miR-30a-3p 0 0 1
chr8:61569853|61570065 hsa-miR-30d-5p 0 0 1
chr8:61569853|61570065 hsa-miR-30d-3p 0 0 1
chr8:61569853|61570065 hsa-miR-181c-5p 0 0 1
chr8:61569853|61570065 hsa-miR-181c-3p 0 0 1
chr8:61569853|61570065 hsa-miR-30b-5p 0 0 1
chr8:61569853|61570065 hsa-miR-30b-3p 0 0 1
chr8:61569853|61570065 hsa-miR-30e-5p 0 0 1
chr8:61569853|61570065 hsa-miR-30e-3p 0 0 1
chr8:61569853|61570065 hsa-miR-383-5p 0 0 1
chr8:61569853|61570065 hsa-miR-383-3p 0 0 1
chr8:61569853|61570065 hsa-miR-433-5p 0 0 1
chr8:61569853|61570065 hsa-miR-433-3p 0 0 1
chr8:61569853|61570065 hsa-miR-488-5p 0 0 1
chr8:61569853|61570065 hsa-miR-488-3p 0 0 1
chr8:61569853|61570065 hsa-miR-495-5p 0 0 1
chr8:61569853|61570065 hsa-miR-495-3p 0 0 1
chr8:61569853|61570065 hsa-miR-181d-5p 0 0 1
chr8:61569853|61570065 hsa-miR-181d-3p 0 0 1
chr8:61569853|61570065 hsa-miR-527 0 0 1
chr8:61569853|61570065 hsa-miR-507 0 0 1
chr8:61569853|61570065 hsa-miR-557 0 0 1
chr8:61569853|61570065 hsa-miR-575 0 0 1
chr8:61569853|61570065 hsa-miR-601 0 1 1
chr8:61569853|61570065 hsa-miR-637 0 0 1
chr8:61569853|61570065 hsa-miR-1323 0 1 1
chr8:61569853|61570065 hsa-miR-708-5p 0 0 1
chr8:61569853|61570065 hsa-miR-708-3p 0 0 1
chr8:61569853|61570065 hsa-miR-543 0 0 1
chr8:61569853|61570065 hsa-miR-939-5p 0 0 1
chr8:61569853|61570065 hsa-miR-939-3p 0 0 1
chr8:61569853|61570065 hsa-miR-1202 0 0 1
chr8:61569853|61570065 hsa-miR-548o-3p 0 0 1
chr8:61569853|61570065 hsa-miR-1266-5p 0 0 1
chr8:61569853|61570065 hsa-miR-1266-3p 0 0 1
chr8:61569853|61570065 hsa-miR-1279 0 0 1
chr8:61569853|61570065 hsa-miR-1284 0 0 1
chr8:61569853|61570065 hsa-miR-513b-5p 0 0 1
chr8:61569853|61570065 hsa-miR-513b-3p 0 0 1
chr8:61569853|61570065 hsa-miR-548o 0 0 1
chr8:61569853|61570065 hsa-miR-28-5p 0 0 1
chr8:61569853|61570065 hsa-miR-338-3p 0 1 1
chr8:61569853|61570065 hsa-miR-518a-5p 0 0 1
chr8:61569853|61570065 hsa-miR-450b-5p 0 0 1
chr8:61569853|61570065 hsa-miR-30c 0 0 1
chr8:61569853|61570065 hsa-miR-181a 0 0 1
chr8:61569853|61570065 hsa-miR-181b 0 0 1
chr8:61569853|61570065 hsa-miR-1259 0 0 1
chr8:61569853|61570065 hsa-miR-1183 0 1 0
chr8:61569853|61570065 hsa-miR-1299 0 1 0
chr8:61569853|61570065 hsa-miR-3139 0 1 0
chr8:61569853|61570065 hsa-miR-4424 0 1 0
chr8:61569853|61570065 hsa-miR-4457 0 1 0
chr8:61569853|61570065 hsa-miR-4493 0 1 0
chr8:61569853|61570065 hsa-miR-4656 1 0 0
chr8:61569853|61570065 hsa-miR-4729 0 1 0
chr8:61569853|61570065 hsa-miR-11399 0 1 0
chr8:61569853|61570065 hsa-miR-8069 0 1 0
chr8:61569853|61570065 hsa-miR-4697-3p 0 1 0
chr8:61569853|61570065 hsa-miR-31-3p 0 1 0
chr8:61569853|61570065 hsa-miR-6770-5p 1 0 0
chr8:61569853|61570065 hsa-miR-6874-5p 1 0 0
chr8:61569853|61570065 hsa-miR-3160-3p 0 1 0
chr8:61569853|61570065 hsa-miR-181b-5p 0 1 0
chr8:61569853|61570065 hsa-miR-6726-5p 1 0 0
chr8:61569853|61570065 hsa-miR-4633-3p 1 0 0
chr8:61569853|61570065 hsa-miR-4700-5p 0 1 0
chr8:61569853|61570065 hsa-miR-4667-5p 1 0 0
chr8:61569853|61570065 hsa-miR-128-2-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:61569853|61570065
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLIDNFAKHRVLDLRVLSKPSTDVH
Nucleotide Sequence ATGTTGATAGATAACTTTGCAAAACACAGAGTTCTAGACCTGAGAGTCCTTTCAAAACCATCTACAGATGTTCACTGA
CircID chr8:61569853|61570065
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MVLKGLSGLELCVLQSYLSTFIFWGVNSL
Nucleotide Sequence ATGGTTTTGAAAGGACTCTCAGGTCTAGAACTCTGTGTTTTGCAAAGTTATCTATCAACATTCATATTCTGGGGAGTTAACTCACTATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab