CircRNA Information

General Information
circRNA Basic Information
CircID chr8:63186522|63186795
Strand +
CircType exon
Host Gene ENSG00000185728.15;
Algorism CIRI2;
Sequence CCCCAATTCCCACATTGCCCTTGGGTTTAAGTTTCGGTTGAGGTTTGGCAGGCTTTCTGGCAATGGCAGCCCAGGAGGTTGGTTTAGGTGCTGCACTGCTAACTGGGGGCACACTATTGGTTGCAATGCTAGTCATACCACTGCTGCTCAAAGCTGTACCTACAGTTTTTGTCACTGCAGCTGTCAGGTCACCACCAATTTTCAGTCCAGTCATGCCTTGCTCAATACTGCTAATGCCAGGCACCTTACTCAAAGTATCATTGCCAAATCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:63186522|63186795 hsa-miR-15a-5p 0 0 1
chr8:63186522|63186795 hsa-miR-15a-3p 0 0 1
chr8:63186522|63186795 hsa-miR-18a-5p 0 0 1
chr8:63186522|63186795 hsa-miR-18a-3p 0 0 1
chr8:63186522|63186795 hsa-miR-96-5p 0 0 1
chr8:63186522|63186795 hsa-miR-96-3p 0 0 1
chr8:63186522|63186795 hsa-miR-107 0 0 1
chr8:63186522|63186795 hsa-miR-148a-5p 0 0 1
chr8:63186522|63186795 hsa-miR-148a-3p 0 0 1
chr8:63186522|63186795 hsa-miR-182-5p 0 0 1
chr8:63186522|63186795 hsa-miR-182-3p 0 0 1
chr8:63186522|63186795 hsa-miR-15b-5p 0 0 1
chr8:63186522|63186795 hsa-miR-15b-3p 0 0 1
chr8:63186522|63186795 hsa-miR-152-5p 0 0 1
chr8:63186522|63186795 hsa-miR-152-3p 0 0 1
chr8:63186522|63186795 hsa-miR-195-5p 0 0 1
chr8:63186522|63186795 hsa-miR-195-3p 0 0 1
chr8:63186522|63186795 hsa-miR-148b-5p 0 0 1
chr8:63186522|63186795 hsa-miR-148b-3p 0 0 1
chr8:63186522|63186795 hsa-miR-422a 0 0 1
chr8:63186522|63186795 hsa-miR-424-5p 0 0 1
chr8:63186522|63186795 hsa-miR-424-3p 0 0 1
chr8:63186522|63186795 hsa-miR-18b-5p 0 0 1
chr8:63186522|63186795 hsa-miR-18b-3p 0 0 1
chr8:63186522|63186795 hsa-miR-497-5p 0 0 1
chr8:63186522|63186795 hsa-miR-497-3p 0 0 1
chr8:63186522|63186795 hsa-miR-596 1 0 1
chr8:63186522|63186795 hsa-miR-631 0 0 1
chr8:63186522|63186795 hsa-miR-648 0 0 1
chr8:63186522|63186795 hsa-miR-661 0 0 1
chr8:63186522|63186795 hsa-miR-1271-5p 0 0 1
chr8:63186522|63186795 hsa-miR-1271-3p 0 0 1
chr8:63186522|63186795 hsa-miR-1179 0 0 1
chr8:63186522|63186795 hsa-miR-1183 0 0 1
chr8:63186522|63186795 hsa-miR-1202 0 0 1
chr8:63186522|63186795 hsa-miR-548e-5p 0 0 1
chr8:63186522|63186795 hsa-miR-548e-3p 0 0 1
chr8:63186522|63186795 hsa-miR-1287-5p 0 0 1
chr8:63186522|63186795 hsa-miR-1287-3p 0 0 1
chr8:63186522|63186795 hsa-miR-1290 0 0 1
chr8:63186522|63186795 hsa-miR-1256 0 0 1
chr8:63186522|63186795 hsa-miR-548g-5p 0 0 1
chr8:63186522|63186795 hsa-miR-548g-3p 0 0 1
chr8:63186522|63186795 hsa-miR-1288-5p 0 0 1
chr8:63186522|63186795 hsa-miR-1288-3p 0 0 1
chr8:63186522|63186795 hsa-miR-299-3p 0 0 1
chr8:63186522|63186795 hsa-miR-361-3p 0 0 1
chr8:63186522|63186795 hsa-miR-876-3p 0 0 1
chr8:63186522|63186795 hsa-miR-876-5p 0 0 1
chr8:63186522|63186795 hsa-miR-548a-3p 0 0 1
chr8:63186522|63186795 hsa-miR-323-5p 0 0 1
chr8:63186522|63186795 hsa-miR-550 0 0 1
chr8:63186522|63186795 hsa-miR-103 0 0 1
chr8:63186522|63186795 hsa-miR-16 0 0 1
chr8:63186522|63186795 hsa-miR-378 0 0 1
chr8:63186522|63186795 hsa-miR-1269 0 0 1
chr8:63186522|63186795 hsa-miR-548f 0 0 1
chr8:63186522|63186795 hsa-miR-1254 0 0 1
chr8:63186522|63186795 hsa-miR-762 1 0 0
chr8:63186522|63186795 hsa-miR-1269a 1 0 0
chr8:63186522|63186795 hsa-miR-1913 1 0 0
chr8:63186522|63186795 hsa-miR-2861 1 0 0
chr8:63186522|63186795 hsa-miR-3147 1 0 0
chr8:63186522|63186795 hsa-miR-3943 1 0 0
chr8:63186522|63186795 hsa-miR-4430 1 0 0
chr8:63186522|63186795 hsa-miR-378h 1 0 0
chr8:63186522|63186795 hsa-miR-4481 1 0 0
chr8:63186522|63186795 hsa-miR-4515 1 0 0
chr8:63186522|63186795 hsa-miR-4519 1 0 0
chr8:63186522|63186795 hsa-miR-4656 1 0 0
chr8:63186522|63186795 hsa-miR-4675 1 0 0
chr8:63186522|63186795 hsa-miR-6076 1 0 0
chr8:63186522|63186795 hsa-miR-6132 1 0 0
chr8:63186522|63186795 hsa-miR-6860 1 0 0
chr8:63186522|63186795 hsa-miR-8073 1 0 0
chr8:63186522|63186795 hsa-miR-134-5p 1 0 0
chr8:63186522|63186795 hsa-miR-8071 1 0 0
chr8:63186522|63186795 hsa-miR-4793-3p 1 0 0
chr8:63186522|63186795 hsa-miR-6753-5p 1 0 0
chr8:63186522|63186795 hsa-miR-103a-3p 1 0 0
chr8:63186522|63186795 hsa-miR-937-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6877-5p 1 0 0
chr8:63186522|63186795 hsa-miR-4740-5p 1 0 0
chr8:63186522|63186795 hsa-miR-4708-3p 1 0 0
chr8:63186522|63186795 hsa-miR-4529-3p 1 0 0
chr8:63186522|63186795 hsa-miR-6812-5p 1 0 0
chr8:63186522|63186795 hsa-miR-5001-5p 1 0 0
chr8:63186522|63186795 hsa-miR-3620-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6780b-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6836-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6862-5p 1 0 0
chr8:63186522|63186795 hsa-miR-449c-5p 1 0 0
chr8:63186522|63186795 hsa-miR-4632-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6858-5p 1 0 0
chr8:63186522|63186795 hsa-miR-33b-3p 1 0 0
chr8:63186522|63186795 hsa-miR-6838-5p 1 0 0
chr8:63186522|63186795 hsa-miR-6839-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:63186522|63186795
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MYLQFLSLQLSGHHQFSVQSCLAQYC
Nucleotide Sequence CTGTACCTACAGTTTTTGTCACTGCAGCTGTCAGGTCACCACCAATTTTCAGTCCAGTCATGCCTTGCTCAATACTGCTAA
CircID chr8:63186522|63186795
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MRFGRLSGNGSPGGWFRCCTANWGHTIGCNASHTTAAQSCTYSFCHCSCQVTTNFQSSHALLNTANARHLTQSIIAKSS
Nucleotide Sequence TTGAGGTTTGGCAGGCTTTCTGGCAATGGCAGCCCAGGAGGTTGGTTTAGGTGCTGCACTGCTAACTGGGGGCACACTATTGGTTGCAATGCTAGTCATACCACTGCTGCTCAAAGCTGTACCTACAGTTTTTGTCACTGCAGCTGTCAGGTCACCACCAATTTTCAGTCCAGTCATGCCTTGCTCAATACTGCTAATGCCAGGCACCTTACTCAAAGTATCATTGCCAAATCCAGC
CircID chr8:63186522|63186795
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MAGFLAMAAQEVGLGAALLTGGTLLVAMLVIPLLLKAVPTVFVTAAVRSPPIFSPVMPCSILLMPGTLLKVSLPNP
Nucleotide Sequence TTGGCAGGCTTTCTGGCAATGGCAGCCCAGGAGGTTGGTTTAGGTGCTGCACTGCTAACTGGGGGCACACTATTGGTTGCAATGCTAGTCATACCACTGCTGCTCAAAGCTGTACCTACAGTTTTTGTCACTGCAGCTGTCAGGTCACCACCAATTTTCAGTCCAGTCATGCCTTGCTCAATACTGCTAATGCCAGGCACCTTACTCAAAGTATCATTGCCAAATCCA
CircID chr8:63186522|63186795
ORF Type ORF4
Protein Length 84
Nucleotide Length 252
Protein Sequence MSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIG
Nucleotide Sequence TTGAGTAAGGTGCCTGGCATTAGCAGTATTGAGCAAGGCATGACTGGACTGAAAATTGGTGGTGACCTGACAGCTGCAGTGACAAAAACTGTAGGTACAGCTTTGAGCAGCAGTGGTATGACTAGCATTGCAACCAATAGTGTGCCCCCAGTTAGCAGTGCAGCACCTAAACCAACCTCCTGGGCTGCCATTGCCAGAAAGCCTGCCAAACCTCAACCGAAACTTAAACCCAAGGGCAATGTGGGAATTGGG
CircID chr8:63186522|63186795
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence MQPIVCPQLAVQHLNQPPGLPLPESLPNLNRNLNPRAMWELG
Nucleotide Sequence TTGCAACCAATAGTGTGCCCCCAGTTAGCAGTGCAGCACCTAAACCAACCTCCTGGGCTGCCATTGCCAGAAAGCCTGCCAAACCTCAACCGAAACTTAAACCCAAGGGCAATGTGGGAATTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab