CircRNA Information

General Information
circRNA Basic Information
CircID chr8:65734794|65745470
Strand -
CircType exon
Host Gene ENSG00000205268.10;
Algorism find_circ;CIRI2;DCC;
Sequence TGTATGCTGGAAAAAGTTGGAAATTGGAATTTTGATATCTTTCTATTTGATAGACTAACAAATGGAAATAGTCTAGTAAGCTTAACCTTTCATTTATTTAGTCTTCATGGATTAATTGAGTACTTCCATTTAGATATGATGAAACTTCGTAGATTTTTAGTTATGATTCAAGAAGATTACCACAGTCAAAATCCTTACCATAACGCAGTCCACGCTGCGGATGTTACTCAGGCCATGCACTGTTACTTAAAGGAACCTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:65734794|65745470 hsa-miR-325 0 0 1
chr8:65734794|65745470 hsa-miR-495-5p 0 0 1
chr8:65734794|65745470 hsa-miR-495-3p 0 0 1
chr8:65734794|65745470 hsa-miR-510-5p 0 0 1
chr8:65734794|65745470 hsa-miR-510-3p 0 0 1
chr8:65734794|65745470 hsa-miR-579-5p 0 0 1
chr8:65734794|65745470 hsa-miR-579-3p 0 0 1
chr8:65734794|65745470 hsa-miR-1208 0 0 1
chr8:65734794|65745470 hsa-miR-1287-5p 0 0 1
chr8:65734794|65745470 hsa-miR-1287-3p 0 0 1
chr8:65734794|65745470 hsa-miR-1246 0 0 1
chr8:65734794|65745470 hsa-miR-1272 0 0 1
chr8:65734794|65745470 hsa-miR-1322 0 0 1
chr8:65734794|65745470 hsa-miR-105-3p 0 1 1
chr8:65734794|65745470 hsa-miR-15a-3p 0 1 1
chr8:65734794|65745470 hsa-miR-512-5p 0 0 1
chr8:65734794|65745470 hsa-miR-628-3p 0 1 1
chr8:65734794|65745470 hsa-miR-490-5p 0 0 1
chr8:65734794|65745470 hsa-miR-875-3p 0 0 1
chr8:65734794|65745470 hsa-miR-140-3p 0 0 1
chr8:65734794|65745470 hsa-miR-455-3p 0 0 1
chr8:65734794|65745470 hsa-miR-500 0 0 1
chr8:65734794|65745470 hsa-miR-586 0 1 0
chr8:65734794|65745470 hsa-miR-604 1 0 0
chr8:65734794|65745470 hsa-miR-639 1 0 0
chr8:65734794|65745470 hsa-miR-3155a 1 0 0
chr8:65734794|65745470 hsa-miR-3135b 1 0 0
chr8:65734794|65745470 hsa-miR-4517 0 1 0
chr8:65734794|65745470 hsa-miR-1587 1 0 0
chr8:65734794|65745470 hsa-miR-5093 1 0 0
chr8:65734794|65745470 hsa-miR-6124 1 0 0
chr8:65734794|65745470 hsa-miR-138-5p 1 0 0
chr8:65734794|65745470 hsa-miR-136-5p 0 1 0
chr8:65734794|65745470 hsa-miR-1972 0 1 0
chr8:65734794|65745470 hsa-miR-6850-5p 1 0 0
chr8:65734794|65745470 hsa-miR-500a-5p 0 1 0
chr8:65734794|65745470 hsa-miR-506-5p 0 1 0
chr8:65734794|65745470 hsa-miR-4699-5p 0 1 0
chr8:65734794|65745470 hsa-miR-4646-5p 1 0 0
chr8:65734794|65745470 hsa-miR-302a-3p 1 0 0
chr8:65734794|65745470 hsa-miR-520f-3p 1 1 0
chr8:65734794|65745470 hsa-miR-3064-3p 0 1 0
chr8:65734794|65745470 hsa-miR-520c-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:65734794|65745470
ORF Type ORF1
Protein Length 86
Nucleotide Length 258
Protein Sequence MLEKVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIEYFHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPK
Nucleotide Sequence ATGCTGGAAAAAGTTGGAAATTGGAATTTTGATATCTTTCTATTTGATAGACTAACAAATGGAAATAGTCTAGTAAGCTTAACCTTTCATTTATTTAGTCTTCATGGATTAATTGAGTACTTCCATTTAGATATGATGAAACTTCGTAGATTTTTAGTTATGATTCAAGAAGATTACCACAGTCAAAATCCTTACCATAACGCAGTCCACGCTGCGGATGTTACTCAGGCCATGCACTGTTACTTAAAGGAACCTAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:65734794|65745470 NOP56 0 2 0
chr8:65734794|65745470 ELAVL1 5 6 1
chr8:65734794|65745470 NUMA1 0 1 0
chr8:65734794|65745470 RC3H1 0 0 1
chr8:65734794|65745470 CNBP 1 0 0
chr8:65734794|65745470 TAF15 0 3 0
chr8:65734794|65745470 FMR1 0 0 1
chr8:65734794|65745470 FUS 1 2 0
chr8:65734794|65745470 SRSF7 0 1 0
chr8:65734794|65745470 SRSF1 0 2 0
chr8:65734794|65745470 NOP58 0 5 1
chr8:65734794|65745470 SRSF3 0 2 0
chr8:65734794|65745470 U2AF1 0 1 1
chr8:65734794|65745470 U2AF2 7 5 4
chr8:65734794|65745470 DDX54 0 0 4
chr8:65734794|65745470 HNRNPL 0 4 0
chr8:65734794|65745470 FIP1L1 0 1 0
chr8:65734794|65745470 HNRNPC 5 13 0
chr8:65734794|65745470 HNRNPA1 0 4 0
chr8:65734794|65745470 ZC3H7B 0 1 1
chr8:65734794|65745470 ACIN1 0 0 2
chr8:65734794|65745470 RANGAP1 0 1 0
chr8:65734794|65745470 BCCIP 0 1 0
chr8:65734794|65745470 IGF2BP1 0 0 2
chr8:65734794|65745470 IGF2BP3 0 1 1
chr8:65734794|65745470 IGF2BP2 1 7 2
chr8:65734794|65745470 TARDBP 0 1 0
chr8:65734794|65745470 BUD13 0 0 1
chr8:65734794|65745470 PRPF8 0 1 0
chr8:65734794|65745470 RBM47 0 1 0
chr8:65734794|65745470 CSTF2T 0 0 1
chr8:65734794|65745470 CSTF2 0 1 0
chr8:65734794|65745470 RBM22 0 2 0
chr8:65734794|65745470 EWSR1 1 1 0
chr8:65734794|65745470 EIF4A3 1 5 3
chr8:65734794|65745470 FBL 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab