CircRNA Information

General Information
circRNA Basic Information
CircID chr8:67131951|67137603
Strand +
CircType exon
Host Gene ENSG00000104218.14;
Algorism find_circ;CIRI2;DCC;
Sequence GAATACGGTTGGACAGAATGAACTGAAGATTACAAGTGATCAAGTGATAAATTCAGGATTGATTTTTGAAGATAAACCGAAACCTTCCAAACAGTCACTTCAGTCTTACCAAGAGGCTTTGCAGCAGCAGATTCGGGAAAGAGAAGAAAGAAGGAAGAAAGAACGTGAAGAAAAAGAAGAATATGAAGCTAAATTAGAAGCTGAAATGAGAACATATAATCCCTGGGGAAAAGGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCTGATAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:67131951|67137603 hsa-miR-15a-5p 0 0 1
chr8:67131951|67137603 hsa-miR-15a-3p 0 0 1
chr8:67131951|67137603 hsa-miR-107 0 0 1
chr8:67131951|67137603 hsa-miR-212-5p 0 0 1
chr8:67131951|67137603 hsa-miR-212-3p 0 0 1
chr8:67131951|67137603 hsa-miR-15b-5p 0 0 1
chr8:67131951|67137603 hsa-miR-15b-3p 0 0 1
chr8:67131951|67137603 hsa-miR-132-5p 0 0 1
chr8:67131951|67137603 hsa-miR-132-3p 0 0 1
chr8:67131951|67137603 hsa-miR-146a-5p 0 0 1
chr8:67131951|67137603 hsa-miR-146a-3p 0 0 1
chr8:67131951|67137603 hsa-miR-195-5p 0 0 1
chr8:67131951|67137603 hsa-miR-195-3p 0 0 1
chr8:67131951|67137603 hsa-miR-424-5p 0 0 1
chr8:67131951|67137603 hsa-miR-424-3p 0 0 1
chr8:67131951|67137603 hsa-miR-497-5p 0 0 1
chr8:67131951|67137603 hsa-miR-497-3p 0 0 1
chr8:67131951|67137603 hsa-miR-577 0 0 1
chr8:67131951|67137603 hsa-miR-589-5p 0 0 1
chr8:67131951|67137603 hsa-miR-589-3p 0 0 1
chr8:67131951|67137603 hsa-miR-622 0 0 1
chr8:67131951|67137603 hsa-miR-1301-5p 0 0 1
chr8:67131951|67137603 hsa-miR-1301-3p 0 0 1
chr8:67131951|67137603 hsa-miR-922 0 0 1
chr8:67131951|67137603 hsa-miR-1253 0 0 1
chr8:67131951|67137603 hsa-miR-1266-5p 0 0 1
chr8:67131951|67137603 hsa-miR-1266-3p 0 0 1
chr8:67131951|67137603 hsa-miR-1252-5p 0 0 1
chr8:67131951|67137603 hsa-miR-1252-3p 0 0 1
chr8:67131951|67137603 hsa-miR-127-5p 0 0 1
chr8:67131951|67137603 hsa-miR-134-5p 0 1 1
chr8:67131951|67137603 hsa-miR-146b-5p 0 0 1
chr8:67131951|67137603 hsa-miR-103 0 0 1
chr8:67131951|67137603 hsa-miR-16 0 0 1
chr8:67131951|67137603 hsa-miR-203 0 0 1
chr8:67131951|67137603 hsa-miR-1245 0 0 1
chr8:67131951|67137603 hsa-miR-184 1 0 0
chr8:67131951|67137603 hsa-miR-637 1 0 0
chr8:67131951|67137603 hsa-miR-765 0 1 0
chr8:67131951|67137603 hsa-miR-2110 0 1 0
chr8:67131951|67137603 hsa-miR-3125 1 0 0
chr8:67131951|67137603 hsa-miR-3132 1 0 0
chr8:67131951|67137603 hsa-miR-3138 1 0 0
chr8:67131951|67137603 hsa-miR-3147 1 0 0
chr8:67131951|67137603 hsa-miR-3153 1 1 0
chr8:67131951|67137603 hsa-miR-3154 1 0 0
chr8:67131951|67137603 hsa-miR-3159 0 1 0
chr8:67131951|67137603 hsa-miR-3185 1 0 0
chr8:67131951|67137603 hsa-miR-3188 1 1 0
chr8:67131951|67137603 hsa-miR-320e 0 1 0
chr8:67131951|67137603 hsa-miR-4298 1 0 0
chr8:67131951|67137603 hsa-miR-4268 0 1 0
chr8:67131951|67137603 hsa-miR-4271 1 0 0
chr8:67131951|67137603 hsa-miR-3916 1 0 0
chr8:67131951|67137603 hsa-miR-4476 1 0 0
chr8:67131951|67137603 hsa-miR-4518 1 1 0
chr8:67131951|67137603 hsa-miR-4533 1 0 0
chr8:67131951|67137603 hsa-miR-4644 1 1 0
chr8:67131951|67137603 hsa-miR-5093 1 0 0
chr8:67131951|67137603 hsa-miR-5703 1 0 0
chr8:67131951|67137603 hsa-miR-5739 1 0 0
chr8:67131951|67137603 hsa-miR-6088 1 0 0
chr8:67131951|67137603 hsa-miR-6090 1 0 0
chr8:67131951|67137603 hsa-miR-6124 1 1 0
chr8:67131951|67137603 hsa-miR-6165 1 0 0
chr8:67131951|67137603 hsa-miR-8085 1 1 0
chr8:67131951|67137603 hsa-miR-8089 1 1 0
chr8:67131951|67137603 hsa-miR-12114 0 1 0
chr8:67131951|67137603 hsa-miR-12120 1 0 0
chr8:67131951|67137603 hsa-miR-12128 1 1 0
chr8:67131951|67137603 hsa-miR-211-3p 1 0 0
chr8:67131951|67137603 hsa-miR-6894-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6510-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6873-5p 1 0 0
chr8:67131951|67137603 hsa-miR-4695-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6746-5p 1 0 0
chr8:67131951|67137603 hsa-miR-4709-3p 1 0 0
chr8:67131951|67137603 hsa-miR-6730-5p 1 1 0
chr8:67131951|67137603 hsa-miR-6820-5p 1 0 0
chr8:67131951|67137603 hsa-miR-197-5p 1 0 0
chr8:67131951|67137603 hsa-miR-1224-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6760-5p 1 1 0
chr8:67131951|67137603 hsa-miR-6782-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6516-5p 0 1 0
chr8:67131951|67137603 hsa-miR-6830-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6878-5p 1 0 0
chr8:67131951|67137603 hsa-miR-7850-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6866-5p 1 1 0
chr8:67131951|67137603 hsa-miR-483-5p 1 0 0
chr8:67131951|67137603 hsa-miR-188-5p 1 0 0
chr8:67131951|67137603 hsa-miR-4520-2-3p 0 1 0
chr8:67131951|67137603 hsa-miR-4520-3p 0 1 0
chr8:67131951|67137603 hsa-miR-6813-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6851-5p 1 1 0
chr8:67131951|67137603 hsa-miR-6774-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6788-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6797-5p 1 0 0
chr8:67131951|67137603 hsa-miR-5196-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6780b-5p 1 0 0
chr8:67131951|67137603 hsa-miR-328-5p 1 0 0
chr8:67131951|67137603 hsa-miR-3187-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6511a-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6739-5p 1 1 0
chr8:67131951|67137603 hsa-miR-6758-5p 1 0 0
chr8:67131951|67137603 hsa-miR-4700-5p 1 1 0
chr8:67131951|67137603 hsa-miR-4646-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6891-5p 1 0 0
chr8:67131951|67137603 hsa-miR-4667-5p 1 1 0
chr8:67131951|67137603 hsa-miR-3689d 0 1 0
chr8:67131951|67137603 hsa-miR-6791-5p 1 1 0
chr8:67131951|67137603 hsa-miR-362-5p 1 0 0
chr8:67131951|67137603 hsa-miR-6838-5p 0 1 0
chr8:67131951|67137603 hsa-miR-200c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:67131951|67137603
ORF Type ORF1
Protein Length 78
Nucleotide Length 234
Protein Sequence VINSGLIFEDKPKPSKQSLQSYQEALQQQIREREERRKKEREEKEEYEAKLEAEMRTYNPWGKGGGGAPLRDAKGNLI
Nucleotide Sequence GTGATAAATTCAGGATTGATTTTTGAAGATAAACCGAAACCTTCCAAACAGTCACTTCAGTCTTACCAAGAGGCTTTGCAGCAGCAGATTCGGGAAAGAGAAGAAAGAAGGAAGAAAGAACGTGAAGAAAAAGAAGAATATGAAGCTAAATTAGAAGCTGAAATGAGAACATATAATCCCTGGGGAAAAGGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCTGATA
CircID chr8:67131951|67137603
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence IRFPFASLRGAPPPPFPQGLYVLISASNLASYSSFSSRSFFLLSSLSRICCCKASW*
Nucleotide Sequence ATCAGATTTCCTTTTGCATCCCTGAGAGGAGCACCACCTCCACCTTTTCCCCAGGGATTATATGTTCTCATTTCAGCTTCTAATTTAGCTTCATATTCTTCTTTTTCTTCACGTTCTTTCTTCCTTCTTTCTTCTCTTTCCCGAATCTGCTGCTGCAAAGCCTCTTGGTAA
CircID chr8:67131951|67137603
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MRGAPPPPFPQGLYVLISASNLASYSSFSSRSFFLLSSLSRICCCKASW
Nucleotide Sequence CTGAGAGGAGCACCACCTCCACCTTTTCCCCAGGGATTATATGTTCTCATTTCAGCTTCTAATTTAGCTTCATATTCTTCTTTTTCTTCACGTTCTTTCTTCCTTCTTTCTTCTCTTTCCCGAATCTGCTGCTGCAAAGCCTCTTGGTAA
CircID chr8:67131951|67137603
ORF Type ORF2
Protein Length 85
Nucleotide Length 255
Protein Sequence MKITSDQVINSGLIFEDKPKPSKQSLQSYQEALQQQIREREERRKKEREEKEEYEAKLEAEMRTYNPWGKGGGGAPLRDAKGNLI
Nucleotide Sequence CTGAAGATTACAAGTGATCAAGTGATAAATTCAGGATTGATTTTTGAAGATAAACCGAAACCTTCCAAACAGTCACTTCAGTCTTACCAAGAGGCTTTGCAGCAGCAGATTCGGGAAAGAGAAGAAAGAAGGAAGAAAGAACGTGAAGAAAAAGAAGAATATGAAGCTAAATTAGAAGCTGAAATGAGAACATATAATCCCTGGGGAAAAGGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCTGATA
CircID chr8:67131951|67137603
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MKINRNLPNSHFSLTKRLCSSRFGKEKKEGRKNVKKKKNMKLN
Nucleotide Sequence TTGAAGATAAACCGAAACCTTCCAAACAGTCACTTCAGTCTTACCAAGAGGCTTTGCAGCAGCAGATTCGGGAAAGAGAAGAAAGAAGGAAGAAAGAACGTGAAGAAAAAGAAGAATATGAAGCTAAATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:67131951|67137603 NOP56 1 2 0
chr8:67131951|67137603 MOV10 0 0 1
chr8:67131951|67137603 ELAVL1 2 5 2
chr8:67131951|67137603 DHX9 1 0 0
chr8:67131951|67137603 SF3B4 1 0 0
chr8:67131951|67137603 FAM120A 0 0 1
chr8:67131951|67137603 PRPF8 0 1 0
chr8:67131951|67137603 SRSF10 0 0 1
chr8:67131951|67137603 FMR1 0 0 1
chr8:67131951|67137603 CPSF6 0 0 1
chr8:67131951|67137603 SRSF1 0 0 2
chr8:67131951|67137603 NOP58 0 2 4
chr8:67131951|67137603 U2AF2 12 8 1
chr8:67131951|67137603 DDX54 0 1 10
chr8:67131951|67137603 HNRNPA2B1 1 0 0
chr8:67131951|67137603 HNRNPC 0 1 0
chr8:67131951|67137603 TRA2A 1 0 9
chr8:67131951|67137603 ZNF184 0 0 1
chr8:67131951|67137603 HNRNPA1 0 3 0
chr8:67131951|67137603 SMNDC1 0 0 1
chr8:67131951|67137603 MSI2 0 0 1
chr8:67131951|67137603 ACIN1 1 0 5
chr8:67131951|67137603 IGF2BP1 1 0 0
chr8:67131951|67137603 IGF2BP2 0 0 6
chr8:67131951|67137603 ELAVL3 0 1 0
chr8:67131951|67137603 BUD13 0 0 2
chr8:67131951|67137603 RBFOX2 0 2 0
chr8:67131951|67137603 SLTM 0 0 1
chr8:67131951|67137603 EIF4G2 0 0 1
chr8:67131951|67137603 CSTF2T 0 0 2
chr8:67131951|67137603 TIAL1 0 1 0
chr8:67131951|67137603 AGO2 1 0 0
chr8:67131951|67137603 EIF4A3 3 1 4
chr8:67131951|67137603 FBL 2 1 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab