CircRNA Information

General Information
circRNA Basic Information
CircID chr8:70159505|70162854
Strand -
CircType exon
Host Gene ENSG00000140396.12;
Algorism find_circ;CIRI2;DCC;
Sequence GCAAGATCACGTCTCTGGATACCAGCACCATGAGAGCAGCCATGAAACCAGGCTGGGAGGACCTGGTAAGAAGGTGTATTCAGAAGTTCCATGCGCAGCATGAAGGAGAATCTGTGTCCTATGCTAAGAGGCATCATCATGAAGGTGCGTGCTCACAGATACCTACTTTTCAGAGGTGTTGGATGTAGACCAAGAGGAAATGAAAATCTTTAGGGATCACAGCCAAGTGAGAAACAGGACTGGGGGAGAGTAGTGTGTGAGATGATGGATTGAACATACTGAGACAAGGATTGGCATTCAGTCAAATCTATCGTTTTTCCTTGTCTGATGGCACTCTTGTTGCTGCACAAACGAAGAGCAAACTCATCCGTTCTCAGACTACTAATGAACCTCAACTTGTAATATCTTTACATATGCTTCACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:70159505|70162854 hsa-miR-27a-5p 0 0 1
chr8:70159505|70162854 hsa-miR-27a-3p 0 0 1
chr8:70159505|70162854 hsa-miR-29a-5p 0 0 1
chr8:70159505|70162854 hsa-miR-29a-3p 0 0 1
chr8:70159505|70162854 hsa-miR-107 0 0 1
chr8:70159505|70162854 hsa-miR-183-5p 0 0 1
chr8:70159505|70162854 hsa-miR-183-3p 0 0 1
chr8:70159505|70162854 hsa-miR-27b-5p 0 0 1
chr8:70159505|70162854 hsa-miR-27b-3p 0 0 1
chr8:70159505|70162854 hsa-miR-29c-5p 0 0 1
chr8:70159505|70162854 hsa-miR-29c-3p 0 0 1
chr8:70159505|70162854 hsa-miR-326 0 0 1
chr8:70159505|70162854 hsa-miR-492 0 0 1
chr8:70159505|70162854 hsa-miR-593-5p 0 0 1
chr8:70159505|70162854 hsa-miR-593-3p 0 0 1
chr8:70159505|70162854 hsa-miR-630 0 0 1
chr8:70159505|70162854 hsa-miR-631 0 0 1
chr8:70159505|70162854 hsa-miR-632 0 0 1
chr8:70159505|70162854 hsa-miR-634 0 1 1
chr8:70159505|70162854 hsa-miR-889-5p 0 0 1
chr8:70159505|70162854 hsa-miR-889-3p 0 0 1
chr8:70159505|70162854 hsa-miR-1231 0 0 1
chr8:70159505|70162854 hsa-miR-1256 0 0 1
chr8:70159505|70162854 hsa-miR-1278 0 0 1
chr8:70159505|70162854 hsa-miR-1252-5p 0 0 1
chr8:70159505|70162854 hsa-miR-1252-3p 0 0 1
chr8:70159505|70162854 hsa-miR-767-5p 0 0 1
chr8:70159505|70162854 hsa-miR-502-5p 0 0 1
chr8:70159505|70162854 hsa-miR-513a-5p 0 0 1
chr8:70159505|70162854 hsa-miR-330-5p 0 0 1
chr8:70159505|70162854 hsa-miR-103 0 0 1
chr8:70159505|70162854 hsa-miR-29b 0 0 1
chr8:70159505|70162854 hsa-miR-762 1 0 0
chr8:70159505|70162854 hsa-miR-1268b 1 0 0
chr8:70159505|70162854 hsa-miR-4490 0 1 0
chr8:70159505|70162854 hsa-miR-4642 1 0 0
chr8:70159505|70162854 hsa-miR-4706 1 0 0
chr8:70159505|70162854 hsa-miR-4739 1 0 0
chr8:70159505|70162854 hsa-miR-4751 1 0 0
chr8:70159505|70162854 hsa-miR-5706 0 1 0
chr8:70159505|70162854 hsa-miR-8060 0 1 0
chr8:70159505|70162854 hsa-miR-11401 0 1 0
chr8:70159505|70162854 hsa-miR-4786-5p 0 1 0
chr8:70159505|70162854 hsa-miR-3192-5p 0 1 0
chr8:70159505|70162854 hsa-miR-1226-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6771-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6749-5p 1 0 0
chr8:70159505|70162854 hsa-miR-3065-3p 0 1 0
chr8:70159505|70162854 hsa-miR-654-5p 1 0 0
chr8:70159505|70162854 hsa-miR-597-3p 1 0 0
chr8:70159505|70162854 hsa-miR-518c-5p 0 1 0
chr8:70159505|70162854 hsa-miR-29b-3p 0 1 0
chr8:70159505|70162854 hsa-miR-1207-5p 1 0 0
chr8:70159505|70162854 hsa-miR-1233-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6778-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6775-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6754-5p 1 0 0
chr8:70159505|70162854 hsa-miR-7107-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6779-5p 1 1 0
chr8:70159505|70162854 hsa-miR-6795-5p 1 1 0
chr8:70159505|70162854 hsa-miR-6883-5p 1 1 0
chr8:70159505|70162854 hsa-miR-6887-5p 1 0 0
chr8:70159505|70162854 hsa-miR-939-5p 1 0 0
chr8:70159505|70162854 hsa-miR-3679-5p 1 0 0
chr8:70159505|70162854 hsa-miR-6785-5p 1 1 0
chr8:70159505|70162854 hsa-miR-370-5p 1 1 0
chr8:70159505|70162854 hsa-miR-1271-5p 1 0 0
chr8:70159505|70162854 hsa-miR-4782-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:70159505|70162854
ORF Type ORF1
Protein Length 87
Nucleotide Length 261
Protein Sequence MRFISSLRTDEFALRLCSNKSAIRQGKTIDLTECQSLSQYFMMMPLSIGHRFSFMLRMELLNTPSYQVLPAWFHGCSHGAGIQRRDL
Nucleotide Sequence TTGAGGTTCATTAGTAGTCTGAGAACGGATGAGTTTGCTCTTCGTTTGTGCAGCAACAAGAGTGCCATCAGACAAGGAAAAACGATAGATTTGACTGAATGCCAATCCTTGTCTCAGTACTTCATGATGATGCCTCTTAGCATAGGACACAGATTCTCCTTCATGCTGCGCATGGAACTTCTGAATACACCTTCTTACCAGGTCCTCCCAGCCTGGTTTCATGGCTGCTCTCATGGTGCTGGTATCCAGAGACGTGATCTT
CircID chr8:70159505|70162854
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MMALLLLHKRRANSSVLRLLMNLNL
Nucleotide Sequence CTGATGGCACTCTTGTTGCTGCACAAACGAAGAGCAAACTCATCCGTTCTCAGACTACTAATGAACCTCAACTTGTAA
CircID chr8:70159505|70162854
ORF Type ORF3
Protein Length 92
Nucleotide Length 276
Protein Sequence MDTSTMRAAMKPGWEDLVRRCIQKFHAQHEGESVSYAKRHHHEVLRQGLAFSQIYRFSLSDGTLVAAQTKSKLIRSQTTNEPQLVISLHMLH
Nucleotide Sequence CTGGATACCAGCACCATGAGAGCAGCCATGAAACCAGGCTGGGAGGACCTGGTAAGAAGGTGTATTCAGAAGTTCCATGCGCAGCATGAAGGAGAATCTGTGTCCTATGCTAAGAGGCATCATCATGAAGTACTGAGACAAGGATTGGCATTCAGTCAAATCTATCGTTTTTCCTTGTCTGATGGCACTCTTGTTGCTGCACAAACGAAGAGCAAACTCATCCGTTCTCAGACTACTAATGAACCTCAACTTGTAATATCTTTACATATGCTTCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:70159505|70162854 U2AF2 10 0 0
chr8:70159505|70162854 MOV10 1 0 2
chr8:70159505|70162854 FUS 2 2 0
chr8:70159505|70162854 PRPF8 1 1 1
chr8:70159505|70162854 TAF15 1 1 0
chr8:70159505|70162854 FMR1 5 0 1
chr8:70159505|70162854 ELAVL1 0 0 1
chr8:70159505|70162854 GNL3 1 0 0
chr8:70159505|70162854 NOP58 3 0 3
chr8:70159505|70162854 NOP56 2 0 0
chr8:70159505|70162854 DDX54 2 1 6
chr8:70159505|70162854 RBM10 4 0 0
chr8:70159505|70162854 HNRNPA2B1 1 0 0
chr8:70159505|70162854 HNRNPC 0 1 0
chr8:70159505|70162854 TRA2A 1 0 0
chr8:70159505|70162854 HNRNPA1 1 0 0
chr8:70159505|70162854 LIN28B 8 0 0
chr8:70159505|70162854 FXR1 2 1 2
chr8:70159505|70162854 FXR2 2 0 0
chr8:70159505|70162854 IGF2BP1 0 0 1
chr8:70159505|70162854 IGF2BP3 0 0 1
chr8:70159505|70162854 IGF2BP2 2 1 1
chr8:70159505|70162854 BUD13 2 0 1
chr8:70159505|70162854 RBM47 0 0 1
chr8:70159505|70162854 CSTF2T 0 0 2
chr8:70159505|70162854 RBM22 0 1 0
chr8:70159505|70162854 AGO2 0 0 3
chr8:70159505|70162854 EIF4A3 3 1 4
chr8:70159505|70162854 FBL 1 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab