CircRNA Information

General Information
circRNA Basic Information
CircID chr8:80037948|80038155
Strand +
CircType exon
Host Gene ENSG00000076554.14;
Algorism CIRI2;
Sequence CACGGAGCCTCTTCCAGAAAAGACACAGGAGAGCCTGTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:80037948|80038155 hsa-miR-107 0 0 1
chr8:80037948|80038155 hsa-miR-34a-5p 0 0 1
chr8:80037948|80038155 hsa-miR-34a-3p 0 0 1
chr8:80037948|80038155 hsa-miR-216a-5p 0 0 1
chr8:80037948|80038155 hsa-miR-216a-3p 0 0 1
chr8:80037948|80038155 hsa-miR-320a-5p 0 0 1
chr8:80037948|80038155 hsa-miR-320a-3p 0 0 1
chr8:80037948|80038155 hsa-miR-379-5p 0 0 1
chr8:80037948|80038155 hsa-miR-379-3p 0 0 1
chr8:80037948|80038155 hsa-miR-380-5p 0 0 1
chr8:80037948|80038155 hsa-miR-380-3p 0 0 1
chr8:80037948|80038155 hsa-miR-133b 0 0 1
chr8:80037948|80038155 hsa-miR-449a 0 0 1
chr8:80037948|80038155 hsa-miR-484 0 0 1
chr8:80037948|80038155 hsa-miR-511-5p 0 0 1
chr8:80037948|80038155 hsa-miR-511-3p 0 0 1
chr8:80037948|80038155 hsa-miR-492 0 0 1
chr8:80037948|80038155 hsa-miR-579-5p 0 0 1
chr8:80037948|80038155 hsa-miR-579-3p 0 0 1
chr8:80037948|80038155 hsa-miR-636 0 0 1
chr8:80037948|80038155 hsa-miR-449b-5p 0 0 1
chr8:80037948|80038155 hsa-miR-449b-3p 0 0 1
chr8:80037948|80038155 hsa-miR-1301-5p 0 0 1
chr8:80037948|80038155 hsa-miR-1301-3p 0 0 1
chr8:80037948|80038155 hsa-miR-1299 0 0 1
chr8:80037948|80038155 hsa-miR-548m 0 0 1
chr8:80037948|80038155 hsa-miR-576-3p 0 0 1
chr8:80037948|80038155 hsa-miR-513a-5p 0 0 1
chr8:80037948|80038155 hsa-miR-875-3p 0 0 1
chr8:80037948|80038155 hsa-miR-320b 0 0 1
chr8:80037948|80038155 hsa-miR-320c 0 0 1
chr8:80037948|80038155 hsa-miR-320d 0 0 1
chr8:80037948|80038155 hsa-miR-34c-5p 0 0 1
chr8:80037948|80038155 hsa-miR-342-3p 0 0 1
chr8:80037948|80038155 hsa-miR-103 0 0 1
chr8:80037948|80038155 hsa-miR-220c 0 0 1
chr8:80037948|80038155 hsa-miR-7 0 0 1
chr8:80037948|80038155 hsa-miR-218 0 0 1
chr8:80037948|80038155 hsa-miR-516b 0 0 1
chr8:80037948|80038155 hsa-miR-133a 0 0 1
chr8:80037948|80038155 hsa-miR-658 1 0 0
chr8:80037948|80038155 hsa-miR-298 1 0 0
chr8:80037948|80038155 hsa-miR-3132 1 0 0
chr8:80037948|80038155 hsa-miR-4440 1 0 0
chr8:80037948|80038155 hsa-miR-4467 1 0 0
chr8:80037948|80038155 hsa-miR-4651 1 0 0
chr8:80037948|80038155 hsa-miR-4692 1 0 0
chr8:80037948|80038155 hsa-miR-7150 1 0 0
chr8:80037948|80038155 hsa-miR-8072 1 0 0
chr8:80037948|80038155 hsa-miR-8073 1 0 0
chr8:80037948|80038155 hsa-miR-6861-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6820-5p 1 0 0
chr8:80037948|80038155 hsa-miR-197-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6748-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6786-5p 1 0 0
chr8:80037948|80038155 hsa-miR-1229-5p 1 0 0
chr8:80037948|80038155 hsa-miR-885-3p 1 0 0
chr8:80037948|80038155 hsa-miR-1225-5p 1 0 0
chr8:80037948|80038155 hsa-miR-10400-5p 1 0 0
chr8:80037948|80038155 hsa-miR-1233-5p 1 0 0
chr8:80037948|80038155 hsa-miR-4763-3p 1 0 0
chr8:80037948|80038155 hsa-miR-6769b-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6778-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6865-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6803-5p 1 0 0
chr8:80037948|80038155 hsa-miR-328-5p 1 0 0
chr8:80037948|80038155 hsa-miR-449c-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6511a-5p 1 0 0
chr8:80037948|80038155 hsa-miR-7151-3p 1 0 0
chr8:80037948|80038155 hsa-miR-9851-5p 1 0 0
chr8:80037948|80038155 hsa-miR-6744-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:80037948|80038155
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MFCYPLPDAASEVQAHLVNMHCHEFLPDVLLFSFTYSFDQIVCGLNKMKISS
Nucleotide Sequence TTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAATATCTTCA
CircID chr8:80037948|80038155
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MLQARSKHILSTCIAMNFYQMCFYLALHIPLTK
Nucleotide Sequence ATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAG
CircID chr8:80037948|80038155
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MQHLAVGSRTKVGISQALLCLFWKRLR
Nucleotide Sequence TTGCAGCATCTGGCAGTGGGTAGCAGAACAAAGGTAGGAATCTCACAGGCTCTCCTGTGTCTTTTCTGGAAGAGGCTCCGT
CircID chr8:80037948|80038155
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MFNPQTIWSKEYVKLNKSTSGRNSWQCMLTRCAWTSLAASGSG
Nucleotide Sequence TTGTTTAACCCACAAACTATTTGGTCAAAGGAATATGTAAAGCTAAATAAAAGCACATCTGGTAGAAATTCATGGCAATGCATGTTGACAAGATGTGCTTGGACCTCGCTTGCAGCATCTGGCAGTGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab